Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 6.7e-143 510.8 274 100.0
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 3.3e-81 305.8 277 65.0
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 1.2e-80 303.9 210 75.7
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 2.1e-80 303.1 246 66.7
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 5.2e-79 298.5 261 67.0
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 6.8e-79 298.1 254 66.5
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 1.7e-77 293.5 204 75.0
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 1.7e-77 293.5 269 65.1
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 1.7e-77 293.5 269 65.1
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.7e-77 293.5 217 70.5
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 8.3e-77 291.2 209 78.5
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 1.4e-76 290.4 253 66.0
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 5.4e-76 288.5 278 58.3
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 1.2e-75 287.3 251 67.3
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 3.5e-75 285.8 204 72.1
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 3.5e-75 285.8 269 64.3
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 4.6e-75 285.4 219 72.6
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 4.6e-75 285.4 255 64.3
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 1.0e-74 284.3 219 72.1
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.7e-74 283.5 253 62.1
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.7e-74 283.5 253 62.1
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 1.7e-74 283.5 253 62.1
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 3.9e-74 282.3 218 68.8
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 5.0e-74 282.0 197 76.1
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 8.6e-74 281.2 254 62.6
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 1.1e-73 280.8 212 68.9
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.5e-73 280.4 259 61.8
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 2.5e-73 279.6 203 75.4
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 3.3e-73 279.3 212 68.9
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 7.3e-73 278.1 194 75.8
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 7.3e-73 278.1 222 68.0
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 9.5e-73 277.7 248 63.3
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 1.6e-72 276.9 214 72.9
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 1.1e-71 274.2 278 58.6
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 2.3e-71 273.1 200 73.0
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 2.3e-71 273.1 243 63.4
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 2.3e-71 273.1 243 63.4
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 3.1e-71 272.7 206 73.3
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 3.1e-71 272.7 206 73.3
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 3.1e-71 272.7 206 73.3
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 4.0e-71 272.3 200 70.0
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 5.2e-71 271.9 195 73.3
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 6.8e-71 271.6 200 71.0
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 1.2e-70 270.8 247 62.8
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 1.5e-70 270.4 258 61.6
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 2.0e-70 270.0 219 66.2
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 2.6e-70 269.6 194 71.6
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 3.4e-70 269.2 206 71.8
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 3.4e-70 269.2 258 61.2
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 4.4e-70 268.9 194 71.6
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 5.8e-70 268.5 207 72.5
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 5.8e-70 268.5 191 77.5
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 7.5e-70 268.1 248 62.1
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 7.5e-70 268.1 199 71.4
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 9.9e-70 267.7 248 62.9
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 1.7e-69 266.9 203 71.4
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 2.2e-69 266.5 203 67.0
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 2.2e-69 266.5 183 72.1
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 2.9e-69 266.2 212 68.4
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.9e-69 266.2 196 70.9
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 3.7e-69 265.8 207 72.0
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 3.7e-69 265.8 207 72.0
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 3.7e-69 265.8 212 68.4
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 4.9e-69 265.4 200 69.5
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 6.4e-69 265.0 208 65.9
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 6.4e-69 265.0 202 66.8
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 1.1e-68 264.2 194 76.3
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 1.4e-68 263.8 206 69.4
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 1.9e-68 263.5 249 61.8
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 1.9e-68 263.5 249 61.8
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 2.4e-68 263.1 190 74.2
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 3.2e-68 262.7 184 76.6
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 3.2e-68 262.7 219 67.6
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 4.1e-68 262.3 249 61.8
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 4.1e-68 262.3 208 66.8
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 9.2e-68 261.2 202 68.3
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 9.2e-68 261.2 184 71.2
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 1.6e-67 260.4 190 72.6
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 3.5e-67 259.2 198 71.7
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 4.6e-67 258.8 209 66.0
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 2.3e-66 256.5 216 64.8
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 2.3e-66 256.5 196 66.8
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 5.1e-66 255.4 183 76.0
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 1.9e-65 253.4 186 71.5
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 1.9e-65 253.4 203 70.0
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 3.3e-65 252.7 190 73.2
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 4.3e-65 252.3 221 65.6
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 9.5e-65 251.1 253 60.1
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 9.5e-65 251.1 200 65.0
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 1.2e-64 250.8 223 65.5
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 1.2e-64 250.8 186 67.7
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 2.8e-64 249.6 195 70.8
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 3.6e-64 249.2 285 55.4
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 8.1e-64 248.1 231 60.2
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 2.4e-63 246.5 170 76.5
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 3.1e-63 246.1 232 64.7
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 6.8e-63 245.0 194 67.5
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 1.2e-62 244.2 240 59.2
CAN.G160.27 Capsicum annuum HOM05D004690 ORTHO05D005527 2.6e-62 243.0 170 78.2
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 3.4e-62 242.7 185 68.1
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 1.3e-61 240.7 218 61.9
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 1.7e-61 240.4 234 60.3
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 1.7e-61 240.4 210 63.8
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 3.8e-61 239.2 187 65.8
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 3.8e-61 239.2 187 65.8
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 8.4e-61 238.0 228 57.5
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 1.1e-60 237.7 234 60.3
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 1.1e-60 237.7 211 60.2
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 9.2e-60 234.6 211 64.0
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 4.6e-59 232.3 219 58.9
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 3.3e-57 226.1 199 60.3
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 1.2e-56 224.2 186 62.4
Oeu054265.1 Olea europaea HOM05D004690 ORTHO05D005527 3.6e-56 222.6 151 76.2
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 4.0e-55 219.2 258 51.9
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 6.9e-55 218.4 190 61.6
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 9.0e-55 218.0 211 59.2
CDE05G2888 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 2.7e-51 206.5 186 61.3
Os02g0794400 Oryza sativa ssp. japonica HOM05D004690 ORTHO05D005527 2.7e-51 206.5 193 60.1
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 1.3e-48 197.6 256 46.1
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 1.6e-48 197.2 262 45.8
Nn8g39977 Nelumbo nucifera HOM05D004690 ORTHO05D005527 3.6e-48 196.1 136 75.0
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 1.2e-46 191.0 168 55.4
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 5.8e-46 188.7 198 51.5
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 1.7e-45 187.2 226 48.2
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 2.2e-45 186.8 252 48.8
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.4e-44 184.1 236 47.5
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 2.3e-42 176.8 201 47.8
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 1.4e-39 167.5 199 45.7
Aa31LG3G8690 Aethionema arabicum HOM05D004690 ORTHO05D005527 5.3e-39 165.6 114 71.1
Manes.06G030800 Manihot esculenta HOM05D004690 ORTHO05D005527 2.9e-37 159.8 109 78.0
Ca_21146_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 7.1e-36 155.2 95 77.9
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 5.1e-34 149.1 173 45.1
Actinidia24377 Actinidia chinensis HOM05D004690 ORTHO05D005527 8.2e-32 141.7 102 76.5
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 8.4e-29 131.7 177 40.7
Actinidia38313 Actinidia chinensis HOM05D004690 ORTHO05D005527 5.1e-26 122.5 168 47.6
PGSC0003DMG400017027 Solanum tuberosum HOM05D004690 ORTHO05D005527 8.7e-26 121.7 67 86.6
SEGI_13735 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 7.4e-25 118.6 127 51.2
Carub.0007s0984 Capsella rubella HOM05D004690 ORTHO05D005527 2.8e-24 116.7 165 47.9
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 1.2e-22 111.3 86 65.1
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 8.5e-21 105.1 159 37.1
Nn8g39976 Nelumbo nucifera HOM05D004690 ORTHO05D005527 3.9e-18 96.3 71 67.6
Hma1.2p1_0028F.1_g017670 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 6.7e-18 95.5 76 64.5
HanXRQChr10g0314901 Helianthus annuus HOM05D000214 ORTHO05D000131 1.9e-17 94.0 82 62.2
SEGI_33455 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 3.3e-17 93.2 155 45.2
Cre01.g001550 Chlamydomonas reinhardtii HOM05D004690 ORTHO05D005527 4.3e-17 92.8 144 35.4
BcaB06g27963 Brassica carinata HOM05D004690 ORTHO05D005527 4.1e-15 86.3 66 63.6
Dinv41359 Davidia involucrata HOM05D004690 ORTHO05D005527 2.9e-13 80.1 61 68.9
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 2.3e-10 70.5 179 26.8
A02p43620 Brassica napus HOM05D004690 ORTHO05D005527 1.1e-09 68.2 44 70.5
A02p43630 Brassica napus HOM05D004690 ORTHO05D005527 1.1e-09 68.2 44 70.5
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 3.3e-09 66.6 160 29.4
BolC2t11481H Brassica oleracea HOM05D004690 ORTHO05D005527 9.7e-09 65.1 37 81.1
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 9.7e-09 65.1 214 29.9
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 8.2e-08 62.0 119 33.6
Ca_21142_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 1.1e-07 61.6 60 56.7
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 2.4e-07 60.5 167 31.1
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 3.1e-07 60.1 179 28.5
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 3.1e-07 60.1 138 29.0
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 5.3e-07 59.3 150 26.7
Oeu054266.1 Olea europaea HOM05D004690 ORTHO05D005527 5.3e-07 59.3 51 62.7
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 5.3e-07 59.3 176 24.4
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 6.9e-07 58.9 173 27.7
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 9.1e-07 58.5 171 23.4
Medtr7g017820 Medicago truncatula HOM05D004690 ORTHO05D005527 9.1e-07 58.5 70 47.1
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 9.1e-07 58.5 179 25.7
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.2e-06 58.2 177 24.3
FAN23G1872 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.5e-06 57.8 46 58.7
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 1.5e-06 57.8 158 27.8
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 1.5e-06 57.8 206 28.2
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.5e-06 57.8 181 27.1
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 2.0e-06 57.4 113 31.0
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.0e-06 57.4 113 31.0
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.0e-06 57.4 113 31.0
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 2.0e-06 57.4 206 28.2
C06p03190 Brassica napus HOM05D004690 ORTHO05D005527 2.6e-06 57.0 37 70.3
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 2.6e-06 57.0 180 30.0
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 2.6e-06 57.0 163 27.0
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 2.6e-06 57.0 175 25.7
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 2.6e-06 57.0 160 26.2
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 3.4e-06 56.6 113 38.1
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 4.5e-06 56.2 174 29.9
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 4.5e-06 56.2 206 27.7
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 5.9e-06 55.8 181 26.5
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 5.9e-06 55.8 113 30.1
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 7.7e-06 55.5 113 38.9
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 7.7e-06 55.5 181 26.5


User provided reference genes

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