Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.1e-186 656.4 309 100.0
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.3e-118 430.3 280 75.4
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 5.1e-115 418.3 280 71.8
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 3.6e-113 412.1 280 69.3
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 6.9e-112 407.9 280 69.3
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.0e-111 406.4 280 68.6
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 3.4e-111 405.6 280 69.6
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 9.9e-111 404.1 280 68.6
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.7e-110 403.3 281 69.4
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 1.7e-110 403.3 280 68.6
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.7e-110 403.3 280 68.2
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.7e-110 403.3 280 68.9
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.9e-110 402.5 280 68.9
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.9e-110 402.5 280 68.6
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 3.8e-110 402.1 280 66.8
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 4.9e-110 401.7 280 68.6
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 4.9e-110 401.7 280 67.9
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 6.4e-110 401.4 280 69.3
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 1.1e-109 400.6 280 67.1
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 1.4e-109 400.2 280 68.2
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 1.4e-109 400.2 280 67.5
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 2.4e-109 399.4 280 67.9
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 5.4e-109 398.3 280 67.9
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 7.1e-109 397.9 280 68.2
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.6e-108 396.7 280 68.6
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.6e-108 396.7 280 66.4
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 1.6e-108 396.7 280 67.5
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 3.5e-108 395.6 280 66.4
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 4.6e-108 395.2 280 66.4
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 6.0e-108 394.8 280 68.6
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 1.0e-107 394.0 280 66.1
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.3e-107 393.7 280 67.9
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 6.7e-107 391.3 280 66.8
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 6.7e-107 391.3 280 67.1
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 8.7e-107 391.0 280 66.8
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 1.1e-106 390.6 280 67.1
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 2.5e-106 389.4 280 66.1
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 2.5e-106 389.4 280 66.1
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 9.6e-106 387.5 274 67.2
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 1.6e-105 386.7 280 67.5
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 2.8e-105 386.0 279 67.4
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 3.7e-105 385.6 280 66.4
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 3.7e-105 385.6 280 66.4
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 3.7e-105 385.6 280 66.4
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 3.7e-105 385.6 280 66.4
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 4.8e-105 385.2 280 66.1
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 4.8e-105 385.2 280 66.4
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 4.8e-105 385.2 280 65.0
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 8.1e-105 384.4 280 66.8
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 1.1e-104 384.0 280 66.8
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 1.1e-104 384.0 280 66.1
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 1.8e-104 383.3 280 66.1
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 1.8e-104 383.3 280 66.8
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 2.4e-104 382.9 275 68.4
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 2.4e-104 382.9 275 68.4
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 2.4e-104 382.9 280 65.7
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 2.4e-104 382.9 272 65.8
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 2.4e-104 382.9 280 66.1
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 3.1e-104 382.5 281 65.5
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 6.9e-104 381.3 280 66.1
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 1.2e-103 380.6 280 66.4
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 1.5e-103 380.2 272 65.1
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 2.0e-103 379.8 280 65.4
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 2.0e-103 379.8 280 65.7
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 3.4e-103 379.0 280 66.4
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 3.4e-103 379.0 275 65.5
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 4.5e-103 378.6 280 65.4
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 7.6e-103 377.9 280 65.4
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 7.6e-103 377.9 280 66.4
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 1.3e-102 377.1 274 66.8
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 1.3e-102 377.1 274 67.2
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 1.7e-102 376.7 280 66.4
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 1.7e-102 376.7 280 65.7
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 2.2e-102 376.3 274 66.4
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 2.9e-102 375.9 280 65.7
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.9e-102 375.9 280 65.0
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 3.8e-102 375.6 280 65.7
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 3.8e-102 375.6 280 65.7
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 4.9e-102 375.2 280 64.6
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 4.9e-102 375.2 279 66.3
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 4.9e-102 375.2 274 66.1
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 8.4e-102 374.4 440 46.6
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 8.4e-102 374.4 265 65.7
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 1.1e-101 374.0 274 65.7
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 1.4e-101 373.6 286 63.6
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.4e-101 373.6 280 65.4
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 1.4e-101 373.6 275 65.5
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.9e-101 373.2 280 65.0
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 4.2e-101 372.1 280 64.6
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 7.1e-101 371.3 280 64.3
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 7.1e-101 371.3 280 63.6
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 7.1e-101 371.3 280 63.6
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 1.6e-100 370.2 280 64.3
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 1.6e-100 370.2 280 65.0
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 2.7e-100 369.4 280 63.2
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 3.5e-100 369.0 259 68.3
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 7.9e-100 367.9 275 64.4
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 1.0e-99 367.5 274 64.6
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 1.3e-99 367.1 280 63.2
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 1.3e-99 367.1 280 63.2
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 1.8e-99 366.7 274 65.0
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 2.3e-99 366.3 281 62.6
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.1e-99 365.2 272 65.4
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 6.7e-99 364.8 274 64.6
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 6.7e-99 364.8 280 62.1
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 1.1e-98 364.0 280 63.9
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.9e-98 363.2 290 62.8
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 3.3e-98 362.5 277 63.9
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 5.7e-98 361.7 449 46.1
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 9.6e-98 360.9 280 62.5
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 2.1e-97 359.8 283 64.3
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 1.4e-96 357.1 275 63.3
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 3.1e-96 355.9 269 64.7
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 5.5e-93 345.1 260 63.1
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 5.5e-93 345.1 280 62.1
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 8.7e-91 337.8 280 60.4
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 5.7e-90 335.1 280 60.4
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 6.3e-89 331.6 280 59.6
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 1.1e-88 330.9 263 62.4
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 7.7e-87 324.7 281 58.7
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.0e-86 324.3 275 60.0
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 4.6e-84 315.5 281 57.3
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 5.5e-77 292.0 199 68.3
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 8.8e-75 284.6 193 69.4
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 7.2e-61 238.4 153 68.0
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.8e-59 233.8 387 39.0
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 2.0e-58 230.3 414 37.9
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 5.7e-58 228.8 163 68.1
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 1.3e-57 227.6 153 68.6
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 9.4e-53 211.5 147 67.3
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.1e-52 210.3 280 45.4
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.1e-52 210.3 156 63.5
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 2.2e-49 200.3 125 71.2
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.8e-49 199.9 271 42.1
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 1.3e-38 164.5 359 35.1
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 8.6e-38 161.8 128 63.3
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 9.5e-37 158.3 127 63.0
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.8e-35 154.1 125 60.8
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 2.2e-33 147.1 118 60.2
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 2.4e-32 143.7 120 60.0
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.1e-19 101.7 72 68.1
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 6.8e-19 99.0 72 63.9
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 4.4e-18 96.3 68 66.2
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 3.8e-17 93.2 72 63.9
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 6.4e-17 92.4 66 63.6
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 2.4e-16 90.5 64 67.2
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.2e-15 88.2 68 57.4
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 2.3e-14 84.0 72 58.3
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 2.3e-14 84.0 72 56.9
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 1.5e-13 81.3 58 62.1
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 8.9e-11 72.0 46 67.4
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.5e-10 71.2 65 56.9
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 2.2e-09 67.4 41 70.7
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 9.3e-08 62.0 41 61.0
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.7e-07 60.5 39 61.5
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 1.0e-06 58.5 40 62.5
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 5.1e-06 56.2 41 56.1


User provided reference genes

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