Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 2.0e-167 592.4 317 100.0
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 8.5e-33 145.2 282 37.2
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 1.2e-31 141.4 296 33.8
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 1.5e-29 134.4 295 35.6
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 2.6e-29 133.7 282 37.9
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 7.0e-27 125.6 286 33.9
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 1.2e-26 124.8 301 35.2
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 1.2e-26 124.8 276 37.0
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 2.7e-26 123.6 270 38.1
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 5.9e-26 122.5 291 32.6
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 2.9e-25 120.2 275 41.1
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 3.8e-25 119.8 271 37.3
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 3.8e-25 119.8 299 33.4
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 5.5e-24 115.9 267 36.3
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 1.6e-23 114.4 286 32.9
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 8.0e-23 112.1 280 31.4
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 8.0e-23 112.1 270 35.2
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 1.4e-22 111.3 277 31.0
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 1.8e-22 110.9 281 32.0
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 2.3e-22 110.5 302 29.8
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 2.3e-22 110.5 273 34.1
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 3.0e-22 110.2 276 29.7
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 6.8e-22 109.0 274 36.5
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 8.8e-22 108.6 270 34.8
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 1.2e-21 108.2 273 30.8
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 1.5e-21 107.8 301 32.6
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 2.0e-21 107.5 269 31.6
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 5.7e-21 105.9 270 33.0
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 7.5e-21 105.5 275 33.1
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 9.8e-21 105.1 281 28.8
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 9.8e-21 105.1 273 31.9
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 1.3e-20 104.8 276 34.1
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 1.3e-20 104.8 90 45.6
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 1.7e-20 104.4 229 34.9
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 1.7e-20 104.4 270 35.2
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.7e-20 104.4 196 33.7
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 2.2e-20 104.0 285 30.5
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 4.9e-20 102.8 297 28.6
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 4.9e-20 102.8 178 37.1
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 8.3e-20 102.1 83 48.2
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 1.1e-19 101.7 278 35.6
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 1.1e-19 101.7 88 47.7
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 1.4e-19 101.3 297 28.3
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 1.8e-19 100.9 292 33.9
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 1.8e-19 100.9 298 36.2
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 1.8e-19 100.9 270 31.9
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 1.8e-19 100.9 270 31.9
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 1.8e-19 100.9 289 30.1
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 3.1e-19 100.1 285 29.5
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 4.1e-19 99.8 300 33.7
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 4.1e-19 99.8 202 35.6
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 4.1e-19 99.8 83 54.2
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 4.1e-19 99.8 276 35.5
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 5.4e-19 99.4 298 27.5
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 5.4e-19 99.4 340 27.4
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 5.4e-19 99.4 284 31.7
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 7.0e-19 99.0 270 32.6
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 7.0e-19 99.0 83 54.2
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 1.2e-18 98.2 300 32.0
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 1.2e-18 98.2 211 37.4
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 1.2e-18 98.2 312 28.2
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 1.6e-18 97.8 309 32.7
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 1.6e-18 97.8 180 41.7
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 1.6e-18 97.8 279 26.5
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 2.0e-18 97.4 83 51.8
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 2.0e-18 97.4 293 34.5
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 2.7e-18 97.1 180 42.8
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 2.7e-18 97.1 297 28.3
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 2.7e-18 97.1 74 54.1
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 2.7e-18 97.1 285 29.1
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 3.5e-18 96.7 300 31.3
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 3.5e-18 96.7 300 31.0
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 3.5e-18 96.7 225 30.2
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 3.5e-18 96.7 252 37.3
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 3.5e-18 96.7 268 35.8
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 4.5e-18 96.3 311 30.2
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 4.5e-18 96.3 316 29.4
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 4.5e-18 96.3 200 38.5
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 5.9e-18 95.9 83 48.2
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 1.3e-17 94.7 272 29.8
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 1.3e-17 94.7 278 32.0
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 2.9e-17 93.6 73 58.9
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 3.8e-17 93.2 200 33.5
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 3.8e-17 93.2 83 49.4
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 5.0e-17 92.8 72 54.2
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 5.0e-17 92.8 278 27.7
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 5.0e-17 92.8 87 47.1
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 5.0e-17 92.8 83 49.4
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 6.6e-17 92.4 87 47.1
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 8.6e-17 92.0 86 41.9
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 8.6e-17 92.0 288 34.7
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 1.1e-16 91.7 323 29.4
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.1e-16 91.7 83 49.4
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 1.1e-16 91.7 296 25.7
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 1.1e-16 91.7 158 36.7
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 1.5e-16 91.3 289 34.6
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 1.9e-16 90.9 89 48.3
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 1.9e-16 90.9 255 29.8
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 3.3e-16 90.1 202 34.2
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 4.3e-16 89.7 287 27.5
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 5.6e-16 89.4 272 31.6
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 5.6e-16 89.4 154 40.9
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 5.6e-16 89.4 272 28.3
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 2.1e-15 87.4 83 44.6
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 2.1e-15 87.4 273 35.2
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 2.1e-15 87.4 276 30.8
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 2.8e-15 87.0 73 52.1
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 3.0e-14 83.6 247 33.2
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 3.0e-14 83.6 289 30.8
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 8.9e-14 82.0 302 28.8
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.5e-13 81.3 303 25.4
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 2.0e-13 80.9 114 41.2
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 1.7e-12 77.8 269 27.5
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 4.9e-12 76.3 79 40.5
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.8e-11 74.3 65 53.8
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 3.2e-11 73.6 268 31.3
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 3.2e-11 73.6 286 26.2
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 5.4e-11 72.8 303 26.4
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 9.2e-11 72.0 93 37.6
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 5.0e-09 66.2 47 57.4
Mapoly1798s0001 Marchantia polymorpha HOM05D006067 ORTHO05D007327 8.6e-09 65.5 88 36.4
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 3.6e-07 60.1 61 47.5
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 8.9e-06 55.5 71 42.3


User provided reference genes

Program Settings