Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 4.8e-114 414.5 201 100.0
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 4.8e-74 281.6 218 67.9
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 1.4e-73 280.0 210 70.0
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 1.0e-71 273.9 213 67.6
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 1.0e-71 273.9 213 67.6
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 1.7e-71 273.1 209 69.4
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 2.2e-71 272.7 218 67.0
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 2.2e-71 272.7 218 67.0
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 2.2e-71 272.7 218 67.0
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 2.9e-71 272.3 209 68.4
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 5.0e-71 271.6 213 66.7
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 5.0e-71 271.6 218 66.5
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 6.5e-71 271.2 218 66.5
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 6.5e-71 271.2 209 69.4
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 6.5e-71 271.2 218 66.1
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 8.5e-71 270.8 213 67.1
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 8.5e-71 270.8 213 67.1
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 8.5e-71 270.8 218 66.1
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 8.5e-71 270.8 218 66.1
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 1.1e-70 270.4 218 66.5
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 1.1e-70 270.4 218 66.5
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 1.9e-70 269.6 213 66.7
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 1.9e-70 269.6 213 66.7
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 1.9e-70 269.6 213 66.7
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 1.9e-70 269.6 213 66.7
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 1.9e-70 269.6 213 66.7
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 1.9e-70 269.6 213 66.7
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 1.9e-70 269.6 213 66.7
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 1.9e-70 269.6 203 69.0
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 1.9e-70 269.6 200 68.5
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 1.9e-70 269.6 213 66.7
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 4.2e-70 268.5 213 66.7
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 4.2e-70 268.5 203 69.0
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 9.4e-70 267.3 213 66.2
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 9.4e-70 267.3 213 66.2
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 1.2e-69 266.9 209 68.4
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 1.2e-69 266.9 209 68.4
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 2.1e-69 266.2 209 67.9
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 2.7e-69 265.8 213 65.7
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 2.7e-69 265.8 213 66.7
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 3.6e-69 265.4 209 67.9
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 8.0e-69 264.2 213 64.8
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 8.0e-69 264.2 213 64.8
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 1.4e-68 263.5 213 66.2
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 1.8e-68 263.1 209 67.5
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 6.8e-68 261.2 207 67.6
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 6.8e-68 261.2 213 65.3
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 6.8e-68 261.2 213 65.3
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 2.2e-66 256.1 213 64.8
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 8.3e-66 254.2 206 65.0
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.7e-64 247.7 190 70.0
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 8.6e-63 244.2 188 70.2
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 6.1e-61 238.0 192 66.1
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 8.9e-60 234.2 192 64.6
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 2.6e-59 232.6 208 61.5
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 2.4e-57 226.1 203 62.1
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 4.1e-57 225.3 202 60.4
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 1.2e-56 223.8 145 78.6
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 5.9e-56 221.5 117 89.7
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 2.3e-55 219.5 209 59.8
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 2.3e-55 219.5 209 59.8
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 6.6e-55 218.0 185 64.3
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 8.6e-55 217.6 189 63.5
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 2.5e-54 216.1 189 63.0
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 1.0e-52 210.7 182 62.1
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 1.0e-52 210.7 182 62.1
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 2.0e-51 206.5 117 85.5
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.1e-49 200.7 128 78.1
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 4.6e-48 195.3 166 63.9
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 6.0e-48 194.9 145 69.7
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.0e-45 184.5 204 55.4
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 3.1e-44 182.6 106 82.1
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.5e-43 180.3 166 60.2
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 1.4e-36 157.1 93 81.7
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 1.7e-34 150.2 94 79.8
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-33 147.1 151 55.6
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 1.7e-31 140.2 88 80.7
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 2.8e-29 132.9 132 58.3
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 2.0e-27 126.7 71 83.1
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 5.8e-27 125.2 207 37.2
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 9.2e-25 117.9 111 57.7
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.1e-24 116.7 69 81.2
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.0e-24 115.2 94 63.8
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 1.5e-22 110.5 61 85.2
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 1.2e-21 107.5 179 39.1
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 3.6e-21 105.9 72 73.6
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 4.0e-20 102.4 68 73.5
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.6e-19 99.8 124 50.8
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.4e-19 99.4 122 48.4
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.8e-19 98.6 59 83.1
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 2.2e-18 96.7 55 80.0
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 2.9e-18 96.3 70 68.6
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.4e-17 94.0 116 50.0
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 5.4e-17 92.0 119 47.1
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 9.3e-17 91.3 53 81.1
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 9.3e-17 91.3 160 40.0
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 1.0e-15 87.8 57 73.7
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.9e-15 85.9 93 51.6
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 6.6e-15 85.1 43 88.4
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 2.8e-13 79.7 43 81.4
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 2.8e-13 79.7 43 81.4
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 2.8e-13 79.7 43 81.4
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.6e-13 79.3 93 55.9
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 8.1e-13 78.2 83 56.6
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 8.1e-13 78.2 91 46.2
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 1.8e-12 77.0 43 81.4
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 4.5e-11 72.4 41 78.0
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 5.8e-11 72.0 43 72.1
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.6e-11 71.6 49 75.5
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 7.6e-11 71.6 61 54.1
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 2.2e-10 70.1 87 47.1
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 6.4e-10 68.6 60 60.0
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 1.9e-09 67.0 50 72.0
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 2.4e-09 66.6 142 35.2
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 2.7e-08 63.2 186 26.9
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 2.7e-08 63.2 33 84.8
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.0e-08 62.0 32 84.4
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 6.0e-08 62.0 118 40.7
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 6.7e-07 58.5 29 89.7
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.9e-06 57.0 29 86.2
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 3.3e-06 56.2 30 80.0
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 4.3e-06 55.8 30 80.0
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 9.6e-06 54.7 31 77.4


User provided reference genes

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