Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 1.3e-57 226.1 107 100.0
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 7.1e-16 87.4 84 53.6
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.0e-14 83.6 87 47.1
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 5.1e-14 81.3 89 49.4
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 1.1e-13 80.1 79 53.2
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 1.5e-13 79.7 92 44.6
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.3e-13 78.6 100 43.0
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 4.3e-13 78.2 100 43.0
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 4.3e-13 78.2 92 47.8
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 5.6e-13 77.8 84 46.4
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.6e-13 77.8 100 43.0
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 1.3e-12 76.6 87 47.1
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 2.1e-12 75.9 88 45.5
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 3.7e-12 75.1 91 46.2
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 3.7e-12 75.1 86 46.5
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 3.7e-12 75.1 93 48.4
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 4.8e-12 74.7 86 45.3
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 4.8e-12 74.7 78 52.6
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 6.2e-12 74.3 92 44.6
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 6.2e-12 74.3 86 46.5
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 8.2e-12 73.9 84 51.2
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 8.2e-12 73.9 89 44.9
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 8.2e-12 73.9 62 53.2
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 1.1e-11 73.6 89 41.6
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 1.1e-11 73.6 77 51.9
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 1.1e-11 73.6 90 43.3
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 1.4e-11 73.2 67 58.2
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.4e-11 73.2 87 46.0
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.4e-11 73.2 84 45.2
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 1.8e-11 72.8 84 46.4
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.8e-11 72.8 76 50.0
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.8e-11 72.8 87 44.8
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.8e-11 72.8 84 46.4
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.8e-11 72.8 65 55.4
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 2.4e-11 72.4 65 52.3
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 3.1e-11 72.0 68 51.5
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 3.1e-11 72.0 89 43.8
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 3.1e-11 72.0 67 55.2
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 4.0e-11 71.6 86 45.3
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 4.0e-11 71.6 75 48.0
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 5.3e-11 71.2 82 51.2
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 5.3e-11 71.2 84 44.0
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 5.3e-11 71.2 86 43.0
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 6.9e-11 70.9 82 43.9
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 6.9e-11 70.9 67 55.2
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 6.9e-11 70.9 86 46.5
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 6.9e-11 70.9 68 52.9
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 9.0e-11 70.5 74 50.0
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.2e-10 70.1 69 52.2
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 1.2e-10 70.1 90 44.4
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.5e-10 69.7 92 40.2
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 1.5e-10 69.7 85 47.1
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 1.5e-10 69.7 85 47.1
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.0e-10 69.3 63 52.4
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 2.0e-10 69.3 85 47.1
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 2.0e-10 69.3 85 47.1
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 2.0e-10 69.3 93 46.2
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 2.0e-10 69.3 63 52.4
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 2.6e-10 68.9 81 46.9
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 3.4e-10 68.6 85 42.4
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 3.4e-10 68.6 65 55.4
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 3.4e-10 68.6 61 57.4
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 3.4e-10 68.6 77 48.1
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 4.5e-10 68.2 72 47.2
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.5e-10 68.2 93 46.2
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 4.5e-10 68.2 93 46.2
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 7.6e-10 67.4 94 41.5
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.0e-09 67.0 73 45.2
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 1.0e-09 67.0 98 39.8
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.3e-09 66.6 80 48.8
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.3e-09 66.6 64 51.6
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 1.3e-09 66.6 84 44.0
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 1.3e-09 66.6 49 61.2
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 1.7e-09 66.2 82 45.1
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.7e-09 66.2 74 44.6
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 1.7e-09 66.2 88 39.8
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.7e-09 66.2 88 39.8
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 1.7e-09 66.2 92 44.6
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.7e-09 66.2 92 44.6
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 1.7e-09 66.2 84 44.0
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.7e-09 66.2 62 51.6
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.2e-09 65.9 63 52.4
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.2e-09 65.9 84 45.2
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 2.2e-09 65.9 78 43.6
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 2.2e-09 65.9 87 41.4
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 2.9e-09 65.5 76 47.4
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 2.9e-09 65.5 97 42.3
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.8e-09 65.1 93 45.2
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 3.8e-09 65.1 74 44.6
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 3.8e-09 65.1 86 40.7
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 4.9e-09 64.7 89 41.6
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 4.9e-09 64.7 62 50.0
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 4.9e-09 64.7 63 54.0
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 6.5e-09 64.3 61 52.5
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 6.5e-09 64.3 63 54.0
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 8.4e-09 63.9 42 69.0
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 8.4e-09 63.9 94 38.3
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 8.4e-09 63.9 60 55.0
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 8.4e-09 63.9 87 39.1
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 8.4e-09 63.9 88 36.4
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 1.4e-08 63.2 68 47.1
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 1.9e-08 62.8 94 43.6
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 2.5e-08 62.4 83 44.6
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.5e-08 62.4 63 52.4
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.5e-08 62.4 61 52.5
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 3.2e-08 62.0 86 38.4
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 3.2e-08 62.0 88 37.5
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 3.2e-08 62.0 60 53.3
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 4.2e-08 61.6 76 43.4
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 4.2e-08 61.6 86 38.4
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 5.5e-08 61.2 84 39.3
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 5.5e-08 61.2 61 50.8
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 7.1e-08 60.8 89 37.1
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 7.1e-08 60.8 61 50.8
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 9.3e-08 60.5 68 45.6
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 9.3e-08 60.5 52 55.8
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 1.2e-07 60.1 81 37.0
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 1.2e-07 60.1 61 49.2
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 1.6e-07 59.7 68 41.2
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.6e-07 59.7 52 50.0
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 1.6e-07 59.7 41 65.9
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 2.1e-07 59.3 91 41.8
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 2.1e-07 59.3 99 36.4
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 2.1e-07 59.3 82 39.0
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 2.1e-07 59.3 76 38.2
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 3.5e-07 58.5 85 42.4
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 3.5e-07 58.5 83 38.6
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 7.9e-07 57.4 84 38.1
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 7.9e-07 57.4 71 43.7
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.0e-06 57.0 61 47.5
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.0e-06 57.0 38 63.2
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.3e-06 56.6 74 40.5
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 1.3e-06 56.6 97 38.1
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.8e-06 56.2 73 45.2
Os02g0234700 Oryza sativa ssp. japonica HOM05D005007 ORTHO05D006053 3.0e-06 55.5 38 65.8
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 3.9e-06 55.1 96 35.4
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 6.7e-06 54.3 84 36.9
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 6.7e-06 54.3 42 54.8
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 8.7e-06 53.9 83 38.6
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 8.7e-06 53.9 68 47.1


User provided reference genes

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