Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.4e-26 122.1 56 100.0
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.2e-14 82.4 44 81.8
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 1.2e-09 65.9 46 63.0
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 5.8e-09 63.5 44 61.4
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.8e-09 63.5 44 65.9
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.8e-09 63.5 44 65.9
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.8e-09 63.5 44 65.9
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 7.5e-09 63.2 44 61.4
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 7.5e-09 63.2 46 56.5
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 7.5e-09 63.2 46 56.5
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 9.8e-09 62.8 44 65.9
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 9.8e-09 62.8 44 65.9
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 9.8e-09 62.8 44 65.9
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 9.8e-09 62.8 44 65.9
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 9.8e-09 62.8 44 65.9
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 9.8e-09 62.8 44 61.4
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 1.3e-08 62.4 46 63.0
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 1.3e-08 62.4 46 63.0
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 1.3e-08 62.4 46 63.0
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 1.3e-08 62.4 46 63.0
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 1.3e-08 62.4 46 63.0
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 1.3e-08 62.4 44 65.9
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 1.3e-08 62.4 46 63.0
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 1.3e-08 62.4 44 65.9
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 1.3e-08 62.4 46 63.0
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 1.3e-08 62.4 46 63.0
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 1.3e-08 62.4 44 61.4
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 1.3e-08 62.4 44 61.4
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 1.3e-08 62.4 46 63.0
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 1.7e-08 62.0 47 57.4
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 1.7e-08 62.0 44 61.4
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 1.7e-08 62.0 44 61.4
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 2.2e-08 61.6 43 58.1
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 2.2e-08 61.6 44 61.4
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 2.9e-08 61.2 46 56.5
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 2.9e-08 61.2 51 56.9
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 2.9e-08 61.2 46 60.9
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 2.9e-08 61.2 46 56.5
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 2.9e-08 61.2 44 63.6
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 3.7e-08 60.8 46 60.9
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 3.7e-08 60.8 46 60.9
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 3.7e-08 60.8 46 56.5
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 4.9e-08 60.5 47 55.3
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 6.4e-08 60.1 46 56.5
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 6.4e-08 60.1 46 56.5
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 6.4e-08 60.1 46 54.3
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 8.3e-08 59.7 44 59.1
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 8.3e-08 59.7 44 59.1
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 8.3e-08 59.7 44 56.8
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 8.3e-08 59.7 44 54.5
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 1.4e-07 58.9 50 50.0
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 1.4e-07 58.9 46 54.3
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.4e-07 58.9 44 59.1
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 1.4e-07 58.9 44 59.1
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.4e-07 58.9 44 59.1
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.4e-07 58.9 44 59.1
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.4e-07 58.9 46 56.5
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 1.4e-07 58.9 46 56.5
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.9e-07 58.5 44 59.1
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.9e-07 58.5 46 56.5
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 1.9e-07 58.5 46 54.3
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.9e-07 58.5 44 59.1
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.9e-07 58.5 46 54.3
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.9e-07 58.5 46 54.3
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 1.9e-07 58.5 44 56.8
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 1.9e-07 58.5 44 59.1
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 2.4e-07 58.2 46 54.3
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 2.4e-07 58.2 44 54.5
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 2.4e-07 58.2 46 58.7
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 2.4e-07 58.2 46 58.7
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.4e-07 58.2 44 56.8
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 3.2e-07 57.8 46 54.3
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 3.2e-07 57.8 46 52.2
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 3.2e-07 57.8 46 54.3
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 4.1e-07 57.4 44 56.8
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 4.1e-07 57.4 44 56.8
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 4.1e-07 57.4 46 54.3
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.1e-07 57.4 44 56.8
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.1e-07 57.4 44 56.8
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 4.1e-07 57.4 44 56.8
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 4.1e-07 57.4 46 52.2
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 4.1e-07 57.4 46 54.3
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 5.4e-07 57.0 44 56.8
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 5.4e-07 57.0 44 56.8
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 5.4e-07 57.0 46 54.3
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 5.4e-07 57.0 44 56.8
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 5.4e-07 57.0 44 56.8
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 5.4e-07 57.0 44 56.8
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 5.4e-07 57.0 46 52.2
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 5.4e-07 57.0 44 52.3
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 5.4e-07 57.0 44 56.8
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 5.4e-07 57.0 44 56.8
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 7.0e-07 56.6 46 52.2
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 7.0e-07 56.6 46 54.3
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 7.0e-07 56.6 44 56.8
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 7.0e-07 56.6 44 54.5
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 9.2e-07 56.2 44 52.3
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 9.2e-07 56.2 44 54.5
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 9.2e-07 56.2 44 54.5
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 9.2e-07 56.2 44 54.5
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 1.2e-06 55.8 46 54.3
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.2e-06 55.8 44 54.5
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.2e-06 55.8 44 56.8
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.2e-06 55.8 45 53.3
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 1.6e-06 55.5 44 54.5
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 2.1e-06 55.1 44 52.3
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 2.1e-06 55.1 44 54.5
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 2.7e-06 54.7 44 52.3
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 2.7e-06 54.7 46 54.3
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 3.5e-06 54.3 46 47.8
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 3.5e-06 54.3 44 50.0
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 3.5e-06 54.3 44 50.0
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 3.5e-06 54.3 46 52.2
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 3.5e-06 54.3 44 54.5
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 4.6e-06 53.9 46 50.0
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 4.6e-06 53.9 46 52.2
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 4.6e-06 53.9 46 54.3
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 6.0e-06 53.5 43 55.8
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 7.8e-06 53.1 44 50.0


User provided reference genes

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