Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.1e-50 203.0 98 100.0
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 7.4e-28 127.1 87 72.4
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 4.4e-12 74.7 89 48.3
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 1.3e-11 73.2 93 46.2
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.3e-11 73.2 88 46.6
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.3e-11 73.2 69 53.6
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.3e-11 73.2 69 55.1
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.7e-11 72.8 57 59.6
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 2.8e-11 72.0 90 44.4
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 3.7e-11 71.6 76 52.6
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 4.8e-11 71.2 57 56.1
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 8.3e-11 70.5 74 44.6
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 8.3e-11 70.5 76 50.0
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 8.3e-11 70.5 76 50.0
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 8.3e-11 70.5 74 44.6
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 8.3e-11 70.5 64 57.8
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 1.1e-10 70.1 78 43.6
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 1.1e-10 70.1 78 43.6
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 1.1e-10 70.1 78 43.6
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 1.4e-10 69.7 76 50.0
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 1.4e-10 69.7 76 50.0
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 1.8e-10 69.3 76 50.0
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 2.4e-10 68.9 57 57.9
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 4.1e-10 68.2 58 55.2
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 5.4e-10 67.8 76 50.0
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 5.4e-10 67.8 58 55.2
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 7.0e-10 67.4 57 57.9
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 7.0e-10 67.4 95 41.1
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 7.0e-10 67.4 47 61.7
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 9.1e-10 67.0 75 50.7
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 1.2e-09 66.6 76 50.0
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.6e-09 66.2 81 46.9
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-09 66.2 64 51.6
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.6e-09 66.2 79 45.6
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 2.7e-09 65.5 57 56.1
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 2.7e-09 65.5 64 51.6
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.7e-09 65.5 64 51.6
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.7e-09 65.5 64 51.6
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.7e-09 65.5 64 51.6
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 2.7e-09 65.5 67 47.8
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 3.5e-09 65.1 57 56.1
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 3.5e-09 65.1 67 47.8
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 3.5e-09 65.1 66 53.0
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.5e-09 64.7 117 38.5
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 4.5e-09 64.7 117 38.5
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 4.5e-09 64.7 71 52.1
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 4.5e-09 64.7 58 55.2
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 4.5e-09 64.7 58 55.2
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 4.5e-09 64.7 69 50.7
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 5.9e-09 64.3 56 55.4
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 5.9e-09 64.3 90 43.3
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 5.9e-09 64.3 56 55.4
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 5.9e-09 64.3 57 56.1
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 5.9e-09 64.3 57 52.6
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 5.9e-09 64.3 55 56.4
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 7.7e-09 63.9 57 54.4
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 7.7e-09 63.9 90 43.3
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 7.7e-09 63.9 75 46.7
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 7.7e-09 63.9 75 46.7
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 7.7e-09 63.9 56 55.4
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 7.7e-09 63.9 68 52.9
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 1.3e-08 63.2 95 38.9
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.3e-08 63.2 57 54.4
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.3e-08 63.2 94 41.5
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 1.3e-08 63.2 58 53.4
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 1.3e-08 63.2 57 54.4
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 1.7e-08 62.8 57 52.6
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 1.7e-08 62.8 89 42.7
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 2.2e-08 62.4 57 54.4
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 2.2e-08 62.4 67 49.3
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 2.2e-08 62.4 52 57.7
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 2.9e-08 62.0 56 44.6
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 3.8e-08 61.6 66 50.0
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 3.8e-08 61.6 66 50.0
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 3.8e-08 61.6 100 40.0
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 3.8e-08 61.6 64 50.0
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 3.8e-08 61.6 57 54.4
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 5.0e-08 61.2 65 49.2
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 5.0e-08 61.2 68 45.6
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 5.0e-08 61.2 116 37.9
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 5.0e-08 61.2 66 48.5
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 5.0e-08 61.2 57 52.6
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 5.0e-08 61.2 55 54.5
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 5.0e-08 61.2 55 54.5
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 6.5e-08 60.8 57 49.1
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 6.5e-08 60.8 61 49.2
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 8.5e-08 60.5 57 50.9
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 8.5e-08 60.5 79 40.5
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 1.1e-07 60.1 57 50.9
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 1.1e-07 60.1 57 52.6
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 1.1e-07 60.1 57 52.6
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 1.5e-07 59.7 60 50.0
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 1.9e-07 59.3 70 44.3
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 2.5e-07 58.9 57 50.9
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 2.5e-07 58.9 71 45.1
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.2e-07 58.5 59 45.8
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 3.2e-07 58.5 41 51.2
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 3.2e-07 58.5 57 50.9
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 3.2e-07 58.5 90 38.9
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 3.2e-07 58.5 89 39.3
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 3.2e-07 58.5 57 49.1
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 4.2e-07 58.2 70 45.7
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 4.2e-07 58.2 45 48.9
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 7.2e-07 57.4 57 49.1
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 7.2e-07 57.4 67 46.3
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 1.6e-06 56.2 55 49.1
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 2.1e-06 55.8 38 63.2
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 3.6e-06 55.1 67 44.8
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 4.7e-06 54.7 38 60.5
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 6.1e-06 54.3 99 36.4
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 6.1e-06 54.3 56 46.4
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 8.0e-06 53.9 89 39.3
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 8.0e-06 53.9 64 45.3


User provided reference genes

Program Settings