Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 8.0e-166 587.0 298 100.0
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 2.1e-65 253.4 292 46.2
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 3.9e-64 249.2 279 44.8
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 5.2e-64 248.8 268 46.6
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 2.6e-63 246.5 271 48.7
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 1.3e-62 244.2 264 48.1
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 2.8e-62 243.0 309 44.7
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 4.8e-62 242.3 308 45.1
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 6.3e-62 241.9 275 44.7
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 6.3e-62 241.9 311 45.3
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 6.3e-62 241.9 307 46.6
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 8.2e-62 241.5 263 49.0
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 1.1e-61 241.1 262 49.6
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 1.4e-61 240.7 303 46.2
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 1.8e-61 240.4 295 44.4
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 2.4e-61 240.0 272 47.1
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.4e-61 240.0 305 45.6
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.4e-61 240.0 261 48.7
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 2.4e-61 240.0 262 50.0
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 3.1e-61 239.6 262 50.0
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 3.1e-61 239.6 294 45.9
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 4.1e-61 239.2 292 44.2
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 4.1e-61 239.2 271 47.6
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.0e-61 238.4 295 46.8
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.0e-61 238.4 295 46.8
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 7.0e-61 238.4 270 45.9
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 2.6e-60 236.5 262 47.3
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 3.5e-60 236.1 267 46.1
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 4.5e-60 235.7 290 44.8
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 1.0e-59 234.6 261 48.7
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 1.7e-59 233.8 262 47.7
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 5.0e-59 232.3 298 44.6
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 5.0e-59 232.3 277 46.6
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 6.5e-59 231.9 262 48.1
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 1.1e-58 231.1 261 47.9
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 1.9e-58 230.3 290 43.4
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 1.9e-58 230.3 261 47.1
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.9e-58 230.3 267 46.4
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.9e-58 230.3 290 44.1
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.5e-58 229.9 312 43.3
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 4.2e-58 229.2 277 46.2
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 5.5e-58 228.8 264 46.2
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 5.5e-58 228.8 295 42.0
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 5.5e-58 228.8 264 47.0
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 5.5e-58 228.8 310 41.0
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 5.5e-58 228.8 263 46.0
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 7.2e-58 228.4 289 45.3
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 7.2e-58 228.4 282 45.0
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 9.4e-58 228.0 261 47.1
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 1.2e-57 227.6 300 43.0
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 1.2e-57 227.6 299 45.2
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 1.6e-57 227.3 262 46.9
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 2.1e-57 226.9 298 42.6
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.1e-57 226.9 265 43.4
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 3.6e-57 226.1 300 41.7
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 8.0e-57 224.9 311 41.2
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 8.0e-57 224.9 296 43.2
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 1.4e-56 224.2 264 44.7
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 3.0e-56 223.0 302 42.7
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.0e-56 223.0 302 43.7
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 4.0e-56 222.6 303 41.9
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 4.0e-56 222.6 298 43.0
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 5.2e-56 222.2 267 45.3
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 5.2e-56 222.2 298 42.3
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 8.8e-56 221.5 283 43.1
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 8.8e-56 221.5 265 43.4
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 8.8e-56 221.5 319 42.0
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.1e-55 221.1 301 41.2
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 1.1e-55 221.1 311 41.5
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 1.1e-55 221.1 307 41.7
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 1.1e-55 221.1 301 42.5
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 1.1e-55 221.1 262 47.3
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 1.5e-55 220.7 296 42.6
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 2.0e-55 220.3 265 43.0
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 2.6e-55 219.9 280 43.9
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.6e-55 219.9 298 42.3
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 2.6e-55 219.9 263 46.0
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 3.3e-55 219.5 262 45.4
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 3.3e-55 219.5 307 40.7
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 4.4e-55 219.2 331 39.6
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 4.4e-55 219.2 310 41.3
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 5.7e-55 218.8 293 41.3
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 7.5e-55 218.4 266 42.5
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 9.7e-55 218.0 282 41.8
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 1.7e-54 217.2 276 45.3
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 1.7e-54 217.2 288 39.2
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 2.2e-54 216.9 301 41.9
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 2.2e-54 216.9 263 45.6
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 6.3e-54 215.3 301 42.9
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 2.4e-53 213.4 306 40.2
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 2.4e-53 213.4 262 44.7
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.1e-53 212.6 265 46.4
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 7.0e-53 211.8 257 42.4
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 9.1e-53 211.5 260 42.3
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 9.1e-53 211.5 311 40.8
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.2e-52 211.1 268 42.5
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.6e-52 210.7 267 42.7
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.0e-52 210.3 276 42.8
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 2.7e-52 209.9 283 43.5
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 3.5e-52 209.5 268 42.5
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 7.7e-52 208.4 253 43.1
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 1.0e-51 208.0 260 44.6
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 1.3e-51 207.6 263 43.3
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 1.7e-51 207.2 293 42.0
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 2.2e-51 206.8 264 42.8
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 5.0e-51 205.7 289 40.5
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 5.0e-51 205.7 298 38.9
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 6.5e-51 205.3 299 40.1
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 8.5e-51 204.9 297 41.4
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 1.1e-50 204.5 263 43.0
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.9e-50 203.8 270 42.6
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 1.9e-50 203.8 263 42.2
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 2.5e-50 203.4 264 43.6
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 2.5e-50 203.4 263 43.3
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.6e-49 200.7 274 43.1
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 1.6e-49 200.7 295 38.3
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 3.6e-49 199.5 267 41.6
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 4.7e-49 199.1 293 39.2
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 6.1e-49 198.7 293 38.9
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.8e-48 197.2 304 39.8
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.0e-48 196.4 201 52.2
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.0e-48 196.4 201 52.2
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 4.4e-47 192.6 262 41.2
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 9.8e-47 191.4 266 40.2
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 1.3e-46 191.0 261 42.9
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 4.8e-46 189.1 194 51.0
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 6.3e-46 188.7 231 42.4
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.4e-45 186.8 282 40.1
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 2.2e-43 180.3 230 47.8
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 4.0e-40 169.5 200 45.0
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 1.7e-35 154.1 178 48.9
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.7e-35 154.1 172 43.0
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.7e-35 154.1 260 37.3
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.1e-34 151.4 256 34.8
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.1e-34 151.4 171 48.5
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.6e-31 140.2 204 39.2
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 7.3e-26 122.1 267 32.2
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 5.8e-23 112.5 132 45.5
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 4.7e-17 92.8 117 39.3
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 6.2e-17 92.4 203 28.6
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 1.5e-15 87.8 95 49.5
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 2.1e-12 77.4 244 26.6
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 1.0e-11 75.1 249 24.9
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 3.0e-11 73.6 282 23.0
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 9.9e-07 58.5 91 34.1


User provided reference genes

Program Settings