Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0006G027 Amborella trichopoda HOM05D011012 ORTHO05D011368 4.7e-52 207.6 107 100.0
Sabra06G0167200 Salix brachista HOM05D000370 ORTHO05D006313 1.4e-19 99.8 93 60.2
Potri.006G216800 Populus trichocarpa HOM05D000370 ORTHO05D006313 4.0e-19 98.2 87 63.2
Nn8g41277 Nelumbo nucifera HOM05D000370 ORTHO05D006313 5.8e-18 94.4 105 51.4
Gorai.001G018600 Gossypium raimondii HOM05D000370 ORTHO05D006313 7.6e-18 94.0 90 57.8
Atru.chr7.1800 Acer truncatum HOM05D000370 ORTHO05D006313 1.3e-17 93.2 100 57.0
SEGI_40993 Sequoiadendron giganteum HOM05D000370 ORTHO05D006313 1.7e-17 92.8 93 57.0
Duzib187G1680 Durio zibethinus HOM05D000370 ORTHO05D006313 2.2e-17 92.4 90 56.7
Gohir.A07G018100 Gossypium hirsutum HOM05D000370 ORTHO05D006313 2.9e-17 92.0 90 56.7
ATR0626G124 Amborella trichopoda HOM05D000370 ORTHO05D006313 3.8e-17 91.7 92 56.5
Thecc.09G067700 Theobroma cacao HOM05D000370 ORTHO05D006313 4.9e-17 91.3 90 55.6
Duzib168G0938 Durio zibethinus HOM05D000370 ORTHO05D006313 8.4e-17 90.5 87 57.5
Gohir.D07G017900 Gossypium hirsutum HOM05D000370 ORTHO05D006313 8.4e-17 90.5 91 54.9
Manes.03G054600 Manihot esculenta HOM05D000370 ORTHO05D006313 1.1e-16 90.1 93 54.8
MBI13_g09077_MAGBIO Magnolia biondii HOM05D000370 ORTHO05D006313 1.4e-16 89.7 98 54.1
GSVIVG01014994001 Vitis vinifera HOM05D000370 ORTHO05D006313 1.9e-16 89.4 89 57.3
TAR626G1046 Trochodendron aralioides HOM05D000370 ORTHO05D006313 2.4e-16 89.0 105 51.4
BraA05t22451Z Brassica rapa HOM05D000370 ORTHO05D006313 4.2e-16 88.2 83 57.8
MD17G1157700 Malus domestica HOM05D000370 ORTHO05D006313 7.1e-16 87.4 105 49.5
BcaC05g29218 Brassica carinata HOM05D000370 ORTHO05D006313 1.2e-15 86.7 95 51.6
C05p54900 Brassica napus HOM05D000370 ORTHO05D006313 1.2e-15 86.7 95 51.6
BolC5t34160H Brassica oleracea HOM05D000370 ORTHO05D006313 1.2e-15 86.7 95 51.6
C03p46040 Brassica napus HOM05D000370 ORTHO05D006313 1.6e-15 86.3 88 53.4
BolC3t16876H Brassica oleracea HOM05D000370 ORTHO05D006313 1.6e-15 86.3 88 53.4
Gohir.D05G038700 Gossypium hirsutum HOM05D000370 ORTHO05D006313 2.1e-15 85.9 92 54.3
Gorai.009G039200 Gossypium raimondii HOM05D000370 ORTHO05D006313 2.1e-15 85.9 92 54.3
Gohir.A05G037200 Gossypium hirsutum HOM05D000370 ORTHO05D006313 3.5e-15 85.1 92 53.3
TWI12G1236 Tripterygium wilfordii HOM05D000370 ORTHO05D006313 3.5e-15 85.1 90 53.3
COL.COLO4_21180 Corchorus olitorius HOM05D000370 ORTHO05D006313 4.6e-15 84.7 86 57.0
Sabra15G0073500 Salix brachista HOM05D011012 ORTHO05D011368 4.6e-15 84.7 100 50.0
Eucgr.F04059 Eucalyptus grandis HOM05D000370 ORTHO05D006313 6.0e-15 84.3 85 56.5
CiPaw.02G129400 Carya illinoinensis HOM05D000370 ORTHO05D006313 7.9e-15 84.0 90 53.3
Thhalv10020358m.g Eutrema salsugineum HOM05D000370 ORTHO05D006313 7.9e-15 84.0 88 56.8
MD09G1169500 Malus domestica HOM05D000370 ORTHO05D006313 7.9e-15 84.0 95 51.6
HPP92_010810 Vanilla planifolia HOM05D000370 ORTHO05D006313 7.9e-15 84.0 94 52.1
CiPaw.01G209200 Carya illinoinensis HOM05D000370 ORTHO05D006313 1.0e-14 83.6 95 50.5
Gohir.A05G116100 Gossypium hirsutum HOM05D000370 ORTHO05D006313 1.0e-14 83.6 95 52.6
Gohir.D05G117000 Gossypium hirsutum HOM05D000370 ORTHO05D006313 1.0e-14 83.6 95 52.6
Gorai.009G121000 Gossypium raimondii HOM05D000370 ORTHO05D006313 1.0e-14 83.6 95 52.6
Sp3g11160 Schrenkiella parvula HOM05D000370 ORTHO05D006313 1.0e-14 83.6 96 52.1
GSVIVG01029452001 Vitis vinifera HOM05D000370 ORTHO05D006313 1.0e-14 83.6 102 49.0
PSO170G0708 Papaver somniferum HOM05D000370 ORTHO05D006313 1.3e-14 83.2 98 50.0
PGR102G3330 Punica granatum HOM05D000370 ORTHO05D006313 1.8e-14 82.8 92 56.5
THA.LOC104822748 Tarenaya hassleriana HOM05D000370 ORTHO05D006313 2.3e-14 82.4 90 53.3
Dinv20314 Davidia involucrata HOM05D000370 ORTHO05D006313 5.1e-14 81.3 90 51.1
BraA03t12947Z Brassica rapa HOM05D000370 ORTHO05D006313 6.7e-14 80.9 88 52.3
RcHm_v2.0_Chr2g0148391 Rosa chinensis HOM05D000370 ORTHO05D006313 6.7e-14 80.9 93 51.6
Actinidia38821 Actinidia chinensis HOM05D000370 ORTHO05D006313 8.7e-14 80.5 85 55.3
Carub.0003s1234 Capsella rubella HOM05D000370 ORTHO05D006313 8.7e-14 80.5 83 57.8
Zm00001eb232490 Zea mays HOM05D000370 ORTHO05D006313 8.7e-14 80.5 98 46.9
PSO063G1283 Papaver somniferum HOM05D000370 ORTHO05D006313 1.1e-13 80.1 98 48.0
Atru.chr3.4086 Acer truncatum HOM05D000370 ORTHO05D006313 1.5e-13 79.7 101 48.5
AL3G24720 Arabidopsis lyrata HOM05D000370 ORTHO05D006313 1.5e-13 79.7 96 55.2
A03p37930 Brassica napus HOM05D000370 ORTHO05D006313 1.5e-13 79.7 88 51.1
Duzib192G0552 Durio zibethinus HOM05D000370 ORTHO05D006313 1.9e-13 79.3 95 50.5
Eucgr.C00757 Eucalyptus grandis HOM05D000370 ORTHO05D006313 1.9e-13 79.3 84 52.4
FAN14G2100 Fragaria x ananassa HOM05D000370 ORTHO05D006313 1.9e-13 79.3 93 48.4
QL03p048724 Quercus lobata HOM05D000370 ORTHO05D011368 1.9e-13 79.3 100 48.0
FAN02G0132 Fragaria x ananassa HOM05D000370 ORTHO05D006313 2.5e-13 79.0 93 49.5
FAN02G1594 Fragaria x ananassa HOM05D000370 ORTHO05D006313 2.5e-13 79.0 93 49.5
FAN09G0130 Fragaria x ananassa HOM05D000370 ORTHO05D006313 2.5e-13 79.0 93 49.5
QL05p089080 Quercus lobata HOM05D000370 ORTHO05D006313 2.5e-13 79.0 100 48.0
QL08p018247 Quercus lobata HOM05D000370 ORTHO05D006313 2.5e-13 79.0 100 48.0
A05p36500 Brassica napus HOM05D000370 ORTHO05D006313 3.3e-13 78.6 95 50.5
THA.LOC104803715 Tarenaya hassleriana HOM05D011012 ORTHO05D011368 3.3e-13 78.6 89 47.2
Zm00001eb227220 Zea mays HOM05D000370 ORTHO05D006313 4.3e-13 78.2 87 51.7
AL7G18440 Arabidopsis lyrata HOM05D011012 ORTHO05D011368 5.6e-13 77.8 80 52.5
CSS0030510 Camellia sinensis var. sinensis HOM05D000370 ORTHO05D006313 5.6e-13 77.8 90 51.1
FvH4_6g36420 Fragaria vesca HOM05D000370 ORTHO05D006313 5.6e-13 77.8 93 48.4
Potri.007G003900 Populus trichocarpa HOM05D000370 ORTHO05D006313 5.6e-13 77.8 108 44.4
BcaB06g25494 Brassica carinata HOM05D000370 ORTHO05D006313 7.4e-13 77.4 83 53.0
BcaC09g52116 Brassica carinata HOM05D011012 ORTHO05D011368 7.4e-13 77.4 80 52.5
A01p05080 Brassica napus HOM05D011012 ORTHO05D011368 7.4e-13 77.4 80 52.5
BolC1t00535H Brassica oleracea HOM05D011012 ORTHO05D011368 7.4e-13 77.4 80 52.5
BraA01t00490Z Brassica rapa HOM05D011012 ORTHO05D011368 7.4e-13 77.4 80 52.5
Thhalv10027222m.g Eutrema salsugineum HOM05D011012 ORTHO05D011368 7.4e-13 77.4 80 53.8
Prupe.3G027500 Prunus persica HOM05D000370 ORTHO05D006313 7.4e-13 77.4 95 48.4
FAN05G4541 Fragaria x ananassa HOM05D000370 ORTHO05D006313 9.6e-13 77.0 96 47.9
AT4G33130 Arabidopsis thaliana HOM05D011012 ORTHO05D011368 1.3e-12 76.6 80 51.2
C01p05550 Brassica napus HOM05D011012 ORTHO05D011368 1.3e-12 76.6 80 52.5
Carub.0007s0733 Capsella rubella HOM05D011012 ORTHO05D011368 1.3e-12 76.6 80 52.5
CDE04G3500 Ceratophyllum demersum HOM05D000370 ORTHO05D006313 1.3e-12 76.6 99 44.4
CSS0048464 Camellia sinensis var. sinensis HOM05D000370 ORTHO05D006313 1.6e-12 76.3 89 50.6
CARHR241150 Cardamine hirsuta HOM05D011012 ORTHO05D011368 1.6e-12 76.3 80 52.5
Sabra07G0002900 Salix brachista HOM05D000370 ORTHO05D006313 1.6e-12 76.3 108 44.4
Thecc.06G050400 Theobroma cacao HOM05D000370 ORTHO05D006313 2.1e-12 75.9 95 48.4
HPP92_027162 Vanilla planifolia HOM05D000370 ORTHO05D006313 2.1e-12 75.9 90 48.9
AUR62001306 Chenopodium quinoa HOM05D000370 ORTHO05D006313 3.7e-12 75.1 105 46.7
Os06g0704100 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D006313 3.7e-12 75.1 92 45.7
AT3G13000 Arabidopsis thaliana HOM05D000370 ORTHO05D006313 4.8e-12 74.7 96 53.1
ClCG05G010450 Citrullus lanatus HOM05D000370 ORTHO05D006313 4.8e-12 74.7 84 48.8
Manes.14G000500 Manihot esculenta HOM05D000370 ORTHO05D006313 4.8e-12 74.7 105 44.8
CARHR087550 Cardamine hirsuta HOM05D000370 ORTHO05D006313 6.2e-12 74.3 83 53.0
Ah.08g218000 Amaranthus hybridus HOM05D000370 ORTHO05D006313 8.2e-12 73.9 96 49.0
AUR62025688 Chenopodium quinoa HOM05D000370 ORTHO05D006313 1.1e-11 73.6 105 45.7
Zm00001eb225950 Zea mays HOM05D000370 ORTHO05D006313 1.1e-11 73.6 80 48.8
MELO3C019563.2 Cucumis melo HOM05D000370 ORTHO05D006313 1.8e-11 72.8 83 48.2
Aa31LG8G240 Aethionema arabicum HOM05D000370 ORTHO05D006313 2.4e-11 72.4 90 52.2
Duzib235G0455 Durio zibethinus HOM05D000370 ORTHO05D006313 2.4e-11 72.4 93 48.4
Ciclev10010792m.g Citrus clementina HOM05D011012 ORTHO05D011368 3.1e-11 72.0 132 43.9
Zm00001eb273360 Zea mays HOM05D000370 ORTHO05D006313 4.0e-11 71.6 80 47.5
CARHR151380 Cardamine hirsuta HOM05D000370 ORTHO05D011368 5.3e-11 71.2 82 51.2
EL10Ac7g18106 Beta vulgaris HOM05D000370 ORTHO05D006313 9.0e-11 70.5 102 45.1
CsaV3_3G018040 Cucumis sativus L. HOM05D000370 ORTHO05D006313 9.0e-11 70.5 83 47.0
TWI18G0896 Tripterygium wilfordii HOM05D000370 ORTHO05D006313 9.0e-11 70.5 90 47.8
CANSAT01G2135 Cannabis sativa HOM05D000370 ORTHO05D006313 1.2e-10 70.1 84 47.6
THA.LOC104812341 Tarenaya hassleriana HOM05D000370 ORTHO05D006313 1.2e-10 70.1 90 44.4
Sp7g30870 Schrenkiella parvula HOM05D011012 ORTHO05D011368 1.5e-10 69.7 80 48.8
Hund18552 Selenicereus undatus HOM05D000370 ORTHO05D006313 2.6e-10 68.9 100 46.0
Os06g0692800 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D006313 7.6e-10 67.4 86 45.3
Sed0024696 Sechium edule HOM05D000370 ORTHO05D006313 1.3e-09 66.6 83 44.6
Sed0025802 Sechium edule HOM05D000370 ORTHO05D006313 1.3e-09 66.6 83 43.4
Aqoxy7G02562 Aquilegia oxysepala HOM05D000370 ORTHO05D006313 2.9e-09 65.5 90 45.6
BcaC05g29217 Brassica carinata HOM05D000370 ORTHO05D006313 3.8e-09 65.1 70 51.4
AT1G16750 Arabidopsis thaliana HOM05D000370 ORTHO05D006313 5.5e-08 61.2 83 45.8
Pp3c3_3580 Physcomitrium patens HOM05D000370 ORTHO05D006313 5.5e-08 61.2 80 46.2
AL1G28920 Arabidopsis lyrata HOM05D000370 ORTHO05D006313 9.3e-08 60.5 83 47.0
Haze_16167 Corylus avellana HOM05D000370 ORTHO05D006313 9.3e-08 60.5 113 38.1
COL.COLO4_26817 Corchorus olitorius HOM05D000370 ORTHO05D006313 1.6e-07 59.7 56 58.9
Pp3c13_8290 Physcomitrium patens HOM05D000370 ORTHO05D006313 2.7e-07 58.9 80 45.0
Gohir.D04G074332 Gossypium hirsutum HOM05D013611 ORTHO05D011368 3.5e-07 58.5 63 49.2
Pp3c26_11890 Physcomitrium patens HOM05D000370 ORTHO05D006313 4.6e-07 58.2 106 38.7
CARHR017210 Cardamine hirsuta HOM05D000370 ORTHO05D006313 6.0e-07 57.8 83 43.4
Thhalv10007325m.g Eutrema salsugineum HOM05D000370 ORTHO05D006313 6.0e-07 57.8 83 45.8
Gohir.D03G111800 Gossypium hirsutum HOM05D013611 ORTHO05D011368 6.0e-07 57.8 63 49.2
Carub.0001s1649 Capsella rubella HOM05D000370 ORTHO05D006313 1.0e-06 57.0 89 42.7
Gohir.D05G357412 Gossypium hirsutum HOM05D013611 ORTHO05D011368 1.8e-06 56.2 63 47.6
Gorai.010G042700 Gossypium raimondii HOM05D013611 ORTHO05D011368 1.8e-06 56.2 63 46.0
Mapoly0019s0124 Marchantia polymorpha HOM05D000370 ORTHO05D006313 1.8e-06 56.2 76 39.5
SHI27952 Sapria himalayana HOM05D000370 ORTHO05D006313 3.0e-06 55.5 88 40.9
Gorai.009G416800 Gossypium raimondii HOM05D013611 ORTHO05D011368 3.9e-06 55.1 63 47.6
BcaB03g13033 Brassica carinata HOM05D000370 ORTHO05D006313 6.7e-06 54.3 83 43.4


User provided reference genes

Program Settings