Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.2e-58 229.6 110 100.0
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 1.2e-21 106.7 87 55.2
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 7.6e-21 104.0 107 47.7
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 1.3e-20 103.2 87 55.2
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 1.3e-20 103.2 90 53.3
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 1.3e-20 103.2 90 53.3
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 2.9e-20 102.1 90 53.3
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 2.9e-20 102.1 88 51.1
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 4.9e-20 101.3 95 54.7
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 1.1e-19 100.1 101 49.5
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 1.1e-19 100.1 87 52.9
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 1.9e-19 99.4 105 43.8
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 2.4e-19 99.0 105 43.8
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 4.1e-19 98.2 90 46.7
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 5.4e-19 97.8 85 55.3
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 5.4e-19 97.8 94 51.1
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 7.1e-19 97.4 85 55.3
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 7.1e-19 97.4 87 51.7
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 7.1e-19 97.4 100 47.0
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 7.1e-19 97.4 89 52.8
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 9.2e-19 97.1 89 51.7
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 1.2e-18 96.7 84 56.0
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 1.2e-18 96.7 81 54.3
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 1.2e-18 96.7 85 54.1
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 1.2e-18 96.7 89 48.3
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 1.2e-18 96.7 85 54.1
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 2.1e-18 95.9 86 54.7
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 2.7e-18 95.5 84 54.8
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 3.5e-18 95.1 91 47.3
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 3.5e-18 95.1 78 57.7
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 4.6e-18 94.7 89 52.8
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 4.6e-18 94.7 102 51.0
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 6.0e-18 94.4 85 54.1
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 6.0e-18 94.4 95 49.5
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 3.9e-17 91.7 82 54.9
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 3.9e-17 91.7 85 54.1
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 8.7e-17 90.5 97 47.4
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 1.5e-16 89.7 80 52.5
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 1.5e-16 89.7 90 46.7
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 1.5e-16 89.7 87 49.4
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 1.5e-16 89.7 87 49.4
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 1.9e-16 89.4 92 44.6
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 4.3e-16 88.2 88 44.3
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 4.3e-16 88.2 86 50.0
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 4.3e-16 88.2 92 45.7
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 4.3e-16 88.2 92 45.7
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 4.3e-16 88.2 88 45.5
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 4.3e-16 88.2 89 47.2
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 5.6e-16 87.8 88 46.6
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 5.6e-16 87.8 87 47.1
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 9.6e-16 87.0 86 48.8
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 9.6e-16 87.0 86 48.8
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 9.6e-16 87.0 86 48.8
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 9.6e-16 87.0 86 48.8
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 1.2e-15 86.7 95 48.4
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 1.2e-15 86.7 91 50.5
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 1.6e-15 86.3 87 48.3
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 1.6e-15 86.3 74 56.8
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 1.6e-15 86.3 87 51.7
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 2.1e-15 85.9 95 48.4
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 2.1e-15 85.9 106 42.5
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 2.8e-15 85.5 92 47.8
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 2.8e-15 85.5 92 47.8
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 2.8e-15 85.5 78 51.3
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 2.8e-15 85.5 93 49.5
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 3.6e-15 85.1 89 50.6
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 6.2e-15 84.3 87 46.0
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 6.2e-15 84.3 84 48.8
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 8.1e-15 84.0 88 46.6
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 8.1e-15 84.0 74 55.4
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 1.4e-14 83.2 87 43.7
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 1.8e-14 82.8 87 42.5
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 3.1e-14 82.0 79 53.2
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 3.1e-14 82.0 91 49.5
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 3.1e-14 82.0 86 45.3
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 4.0e-14 81.6 89 44.9
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 4.0e-14 81.6 99 47.5
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 6.9e-14 80.9 87 48.3
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 6.9e-14 80.9 81 48.1
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 1.5e-13 79.7 66 59.1
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 2.6e-13 79.0 73 50.7
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 2.6e-13 79.0 73 50.7
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 2.6e-13 79.0 78 47.4
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 3.4e-13 78.6 71 50.7
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 5.8e-13 77.8 85 43.5
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 7.6e-13 77.4 68 57.4
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 7.6e-13 77.4 96 45.8
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 9.9e-13 77.0 68 55.9
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 9.9e-13 77.0 66 56.1
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 1.3e-12 76.6 81 44.4
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 2.9e-12 75.5 71 49.3
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 2.9e-12 75.5 94 47.9
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 6.4e-12 74.3 70 52.9
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 2.5e-08 62.4 91 40.7
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 2.8e-07 58.9 67 46.3
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 6.2e-07 57.8 88 40.9
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 5.3e-06 54.7 71 45.1
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 5.3e-06 54.7 71 45.1


User provided reference genes

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