Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 1.3e-268 929.1 449 100.0
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 2.9e-167 592.4 442 64.7
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.1e-163 580.5 442 63.1
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 9.5e-163 577.4 435 63.2
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 9.5e-163 577.4 442 62.2
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 8.1e-162 574.3 439 62.0
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.1e-161 573.9 439 61.5
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 6.8e-161 571.2 442 62.2
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 5.8e-160 568.2 436 61.7
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.3e-159 567.0 436 62.2
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.2e-159 566.2 436 61.5
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 2.9e-159 565.8 435 61.8
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 4.9e-159 565.1 445 61.6
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 8.3e-159 564.3 442 61.5
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 1.4e-158 563.5 440 60.7
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 2.4e-158 562.8 439 61.0
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 9.2e-158 560.8 439 60.1
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.2e-157 560.5 442 60.9
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.6e-157 560.1 442 61.1
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 2.7e-157 559.3 436 60.8
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.3e-156 557.0 446 60.8
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 1.7e-156 556.6 439 59.2
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 6.6e-156 554.7 439 59.5
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 1.1e-155 553.9 436 61.0
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 1.9e-155 553.1 439 59.0
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 7.3e-155 551.2 432 60.2
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 7.3e-155 551.2 439 59.7
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 1.6e-154 550.1 442 59.3
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 2.1e-154 549.7 439 59.5
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 2.1e-154 549.7 436 60.3
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.1e-154 549.7 436 60.3
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 2.1e-154 549.7 439 59.0
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 3.6e-154 548.9 442 59.5
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 4.7e-154 548.5 433 59.6
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.2e-154 548.1 436 60.1
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 6.2e-154 548.1 441 59.0
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 3.1e-153 545.8 437 58.4
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 4.0e-153 545.4 442 59.3
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 1.2e-152 543.9 439 59.0
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 1.5e-152 543.5 442 59.0
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 2.6e-152 542.7 439 59.0
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 3.4e-152 542.3 434 59.4
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 7.6e-152 541.2 439 59.0
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.2e-151 539.7 442 58.8
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.4e-151 538.1 436 58.7
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 1.4e-150 537.0 422 61.1
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.4e-150 537.0 442 57.5
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 2.4e-150 536.2 442 58.6
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 9.2e-150 534.3 460 56.3
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.6e-149 533.5 436 58.5
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 4.6e-149 531.9 443 58.2
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 6.0e-149 531.6 442 57.2
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 3.0e-148 529.3 435 57.9
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 3.0e-148 529.3 435 57.5
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 3.9e-148 528.9 440 58.0
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 1.5e-147 526.9 438 57.5
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 2.5e-147 526.2 439 56.7
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 5.6e-147 525.0 441 56.9
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 1.2e-146 523.9 415 59.3
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 1.6e-146 523.5 434 57.8
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 4.7e-146 521.9 442 58.6
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 1.1e-145 520.8 444 57.7
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 4.0e-145 518.8 436 57.3
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 1.2e-144 517.3 441 57.4
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 2.0e-144 516.5 439 55.1
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 2.0e-144 516.5 442 54.5
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.4e-144 515.8 439 55.1
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 1.4e-142 510.4 439 55.4
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 2.4e-142 509.6 396 61.9
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 2.4e-142 509.6 442 55.0
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 4.2e-142 508.8 439 54.7
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 7.8e-141 504.6 440 55.7
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-140 503.8 440 54.3
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 1.7e-140 503.4 440 53.6
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 1.5e-139 500.4 440 54.1
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.5e-139 500.4 439 54.0
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.9e-139 500.0 440 54.1
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 1.1e-137 494.2 431 52.7
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 5.3e-137 491.9 431 52.7
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 9.0e-137 491.1 431 52.2
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 9.0e-137 491.1 440 52.7
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.2e-136 490.7 431 52.4
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.2e-136 490.7 431 53.1
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 2.0e-136 490.0 431 52.4
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 2.0e-136 490.0 439 53.5
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 4.5e-136 488.8 431 52.2
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 2.2e-135 486.5 411 58.4
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 3.8e-135 485.7 440 53.4
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 8.4e-135 484.6 440 53.0
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 8.4e-135 484.6 435 55.2
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 1.9e-134 483.4 431 52.2
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 2.4e-134 483.0 442 52.5
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 2.4e-134 483.0 442 52.9
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 3.2e-134 482.6 442 52.7
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 3.2e-134 482.6 442 52.7
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 4.2e-134 482.3 440 52.7
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 2.1e-133 479.9 435 54.9
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 2.7e-133 479.6 439 55.1
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.3e-132 477.2 431 51.7
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 9.6e-131 471.1 442 51.6
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.6e-130 470.3 436 50.9
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 2.1e-130 469.9 441 51.2
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 2.4e-129 466.5 456 50.4
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 9.0e-129 464.5 439 51.0
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 1.1e-126 457.6 419 50.6
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.4e-126 457.2 325 65.2
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 9.3e-126 454.5 437 50.1
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 9.3e-126 454.5 414 53.4
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 3.9e-124 449.1 441 50.3
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 2.8e-122 443.0 440 50.7
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 1.6e-117 427.2 419 50.4
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 9.7e-115 417.9 464 49.1
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 6.3e-114 415.2 344 58.7
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.1e-113 414.5 336 54.8
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 5.3e-113 412.1 359 54.0
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 2.6e-112 409.8 440 48.0
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 1.7e-111 407.1 439 50.1
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 9.7e-107 391.3 440 46.1
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 6.5e-103 378.6 481 44.3
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 8.8e-100 368.2 479 42.8
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 6.3e-98 362.1 419 46.8
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 8.2e-98 361.7 398 47.7
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 9.4e-94 348.2 412 43.4
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 1.4e-81 307.8 427 39.1
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 8.6e-71 271.9 252 56.3
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 3.5e-64 250.0 243 48.6
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 5.0e-63 246.1 190 61.1
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 1.4e-60 238.0 203 60.6
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 2.3e-60 237.3 203 60.6
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.0e-51 207.6 170 55.3
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 2.9e-50 203.8 148 60.8
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 7.1e-49 199.1 197 49.2
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 2.0e-43 181.0 223 47.5
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-41 175.3 407 30.7
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-40 171.4 220 44.5
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 1.2e-37 161.8 288 36.1
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 4.7e-37 159.8 151 48.3
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 7.6e-35 152.5 110 60.9
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 3.6e-29 133.7 84 75.0
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 2.4e-28 131.0 71 69.0
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 2.1e-24 117.9 141 48.2
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 1.0e-23 115.5 177 40.7
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 1.9e-22 111.3 76 63.2
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 4.3e-22 110.2 76 63.2
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 5.6e-22 109.8 135 48.1
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 8.1e-21 105.9 131 38.2
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 6.9e-20 102.8 88 53.4
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.2e-18 97.8 114 46.5
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 2.9e-18 97.4 64 65.6
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.9e-18 97.4 54 70.4
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 3.8e-18 97.1 117 42.7
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 3.8e-18 97.1 115 44.3
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-17 95.5 163 33.7
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 1.1e-17 95.5 92 51.1
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 3.2e-17 94.0 117 41.0
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 4.2e-17 93.6 102 44.1
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 3.5e-16 90.5 56 71.4
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 6.7e-15 86.3 185 29.2
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 1.3e-13 82.0 176 33.0
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.7e-13 80.5 56 57.1
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.1e-12 79.0 190 28.4
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 3.1e-12 77.4 55 63.6
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 5.3e-12 76.6 166 31.9
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 9.0e-12 75.9 183 27.9
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 2.6e-11 74.3 54 61.1
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 7.6e-11 72.8 51 60.8
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 2.2e-10 71.2 183 28.4
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 4.9e-10 70.1 93 47.3
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 2.1e-08 64.7 69 43.5
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 3.5e-08 63.9 41 65.9
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 1.3e-07 62.0 49 57.1
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 5.1e-07 60.1 64 40.6
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.1e-07 60.1 64 40.6
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.1e-06 58.9 64 40.6


User provided reference genes

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