Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 4.9e-114 414.5 205 100.0
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 2.8e-53 212.6 125 85.6
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 1.5e-51 206.8 158 63.9
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 2.0e-46 189.9 149 63.8
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 1.3e-45 187.2 158 60.8
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 1.3e-45 187.2 158 60.8
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 1.3e-45 187.2 158 60.8
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 1.3e-45 187.2 158 60.8
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 1.3e-45 187.2 158 60.8
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 4.8e-45 185.3 149 62.4
BcaC05g27131 Brassica carinata HOM05D002660 ORTHO05D003902 3.2e-41 172.6 97 86.6
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 2.0e-38 163.3 158 57.6
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 4.4e-38 162.2 152 55.9
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 4.4e-38 162.2 152 55.9
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 8.2e-37 157.9 158 53.8
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 4.5e-35 152.1 162 50.6
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 4.5e-35 152.1 162 50.6
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 4.5e-35 152.1 162 50.6
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 4.5e-35 152.1 162 50.0
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 5.9e-35 151.8 162 50.0
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 5.9e-35 151.8 162 50.0
GSVIVG01029663001 Vitis vinifera HOM05D002660 ORTHO05D003902 6.5e-34 148.3 106 67.0
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 8.5e-34 147.9 171 47.4
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 8.5e-34 147.9 157 49.7
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 1.5e-33 147.1 161 45.3
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.9e-33 146.7 157 49.7
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.9e-33 146.7 157 49.7
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 5.5e-33 145.2 158 50.0
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 5.5e-33 145.2 156 48.1
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 5.5e-33 145.2 156 48.1
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 7.2e-33 144.8 162 45.7
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 7.2e-33 144.8 162 45.7
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 7.2e-33 144.8 162 45.7
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 7.2e-33 144.8 162 45.7
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 7.2e-33 144.8 162 45.7
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 7.2e-33 144.8 162 45.7
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 9.4e-33 144.4 163 49.7
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 9.4e-33 144.4 158 46.8
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 1.2e-32 144.1 158 47.5
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 1.6e-32 143.7 118 61.0
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 1.6e-32 143.7 168 50.0
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 8.0e-32 141.4 158 49.4
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 8.0e-32 141.4 158 49.4
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 1.0e-31 141.0 149 49.0
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.0e-31 141.0 168 44.6
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 2.3e-31 139.8 162 48.8
SGA_v2.0_scaffold479G52276 Striga asiatica HOM05D002660 ORTHO05D003902 8.8e-31 137.9 122 56.6
Oeu021479.1 Olea europaea HOM05D002660 ORTHO05D011706 1.5e-30 137.1 68 86.8
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 2.0e-30 136.7 162 48.1
Oeu022571.1 Olea europaea HOM05D001387 ORTHO05D001250 2.6e-30 136.3 81 76.5
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 3.3e-30 136.0 178 47.2
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 4.4e-30 135.6 157 43.3
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 5.7e-30 135.2 168 46.4
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 7.5e-30 134.8 160 46.9
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 8.2e-29 131.3 163 43.6
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 8.2e-29 131.3 134 55.2
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 1.1e-28 131.0 141 48.9
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 1.4e-28 130.6 145 47.6
arahy.Tifrunner.gnm1.ann1.DD5JWP Arachis hypogaea HOM05D002660 ORTHO05D003902 2.4e-28 129.8 111 60.4
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 3.1e-28 129.4 158 46.2
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 3.1e-28 129.4 147 44.9
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 9.1e-28 127.9 153 42.5
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.6e-27 127.1 128 48.4
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 2.7e-27 126.3 80 71.2
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 7.7e-27 124.8 183 39.9
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 1.7e-26 123.6 133 44.4
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 6.5e-26 121.7 153 43.1
MBI14_g38260_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 7.2e-25 118.2 80 67.5
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 1.0e-23 114.4 118 50.8
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 4.0e-23 112.5 117 48.7
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 1.2e-22 110.9 149 41.6
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 2.8e-21 106.3 77 64.9
CAN.G999.39 Capsicum annuum HOM05D002660 ORTHO05D003902 6.3e-21 105.1 116 48.3
Gohir.A06G098104 Gossypium hirsutum HOM05D002660 ORTHO05D003902 6.3e-21 105.1 167 37.1
Cfa023009 Carpinus fangiana HOM05D002660 ORTHO05D013121 4.1e-20 102.4 81 67.9
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 1.2e-19 100.9 160 40.6
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 1.2e-19 100.9 160 40.6
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 2.0e-19 100.1 158 41.1
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 2.7e-19 99.8 160 40.6
Gorai.009G406600 Gossypium raimondii HOM05D002660 ORTHO05D003902 3.5e-19 99.4 115 49.6
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.5e-19 99.0 109 46.8
Lsat_1_v5_gn_8_124640 Lactuca sativa HOM05D002660 ORTHO05D003902 5.9e-19 98.6 152 42.8
Lsat_1_v5_gn_8_93860 Lactuca sativa HOM05D002660 ORTHO05D003902 5.9e-19 98.6 152 42.8
MBI04_g15067_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 5.0e-18 95.5 156 38.5
MBI04_g40993_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 5.0e-18 95.5 156 38.5
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 5.0e-18 95.5 73 53.4
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 6.5e-18 95.1 92 51.1
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 1.9e-17 93.6 109 48.6
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 2.5e-17 93.2 113 42.5
MBI06_g04141_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.5e-17 93.2 148 38.5
arahy.Tifrunner.gnm1.ann1.4WR8AK Arachis hypogaea HOM05D002660 ORTHO05D003902 3.2e-17 92.8 82 61.0
arahy.Tifrunner.gnm1.ann1.64IP8W Arachis hypogaea HOM05D002660 ORTHO05D003902 3.2e-17 92.8 82 61.0
arahy.Tifrunner.gnm1.ann1.MHP2RT Arachis hypogaea HOM05D002660 ORTHO05D003902 3.2e-17 92.8 82 61.0
arahy.Tifrunner.gnm1.ann1.RJKU2P Arachis hypogaea HOM05D002660 ORTHO05D003902 3.2e-17 92.8 82 61.0
Nitab4.5_0003758g0080 Nicotiana tabacum HOM05D002660 ORTHO05D003902 3.2e-17 92.8 76 50.0
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 7.2e-17 91.7 76 52.6
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 9.5e-17 91.3 87 47.1
Nitab4.5_0001607g0070 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.1e-16 90.1 73 52.1
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 2.8e-16 89.7 142 37.3
Duzib116G0123 Durio zibethinus HOM05D002660 ORTHO05D003902 6.1e-16 88.6 117 46.2
Gorai.001G162700 Gossypium raimondii HOM05D002660 ORTHO05D003902 8.0e-16 88.2 67 58.2
Solyc11g030860.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.0e-16 88.2 102 46.1
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.0e-16 88.2 85 45.9
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 8.0e-16 88.2 85 45.9
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 1.0e-15 87.8 124 39.5
MBI14_g44090_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 4.0e-15 85.9 76 53.9
arahy.Tifrunner.gnm1.ann1.1F9GAV Arachis hypogaea HOM05D002660 ORTHO05D003902 6.8e-15 85.1 82 57.3
Sc05g0004260 Simmondsia chinensis HOM05D002660 ORTHO05D003902 2.0e-14 83.6 72 62.5
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 3.4e-14 82.8 75 57.3
Nitab4.5_0010333g0110 Nicotiana tabacum HOM05D011968 ORTHO05D014241 5.7e-14 82.0 126 35.7
Nitab4.5_0001023g0120 Nicotiana tabacum HOM05D002660 ORTHO05D003902 7.5e-14 81.6 68 50.0
ATR0502G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 2.8e-13 79.7 55 67.3
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 2.8e-13 79.7 82 43.9
CAN.G1355.2 Capsicum annuum HOM05D002660 ORTHO05D003902 3.7e-13 79.3 75 40.0
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 8.3e-13 78.2 81 44.4
SHI20127 Sapria himalayana HOM05D003517 ORTHO05D028046 1.8e-12 77.0 121 38.8
arahy.Tifrunner.gnm1.ann1.2INJ5A Arachis hypogaea HOM05D002660 ORTHO05D003902 3.1e-12 76.3 110 37.3
Nitab4.5_0013560g0040 Nicotiana tabacum HOM05D011968 ORTHO05D014241 4.1e-12 75.9 130 33.8
CAN.G819.4 Capsicum annuum HOM05D002660 ORTHO05D003902 7.0e-12 75.1 76 44.7
SGA_v2.0_scaffold400G50856 Striga asiatica HOM05D002660 ORTHO05D003902 7.0e-12 75.1 56 60.7
Glyma.17G185300 Glycine max HOM05D002660 ORTHO05D003902 1.2e-11 74.3 91 41.8
Nitab4.5_0000031g0200 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.0e-11 73.6 91 40.7
Rhsim06G0107900 Rhododendron simsii HOM05D002660 ORTHO05D003902 2.0e-11 73.6 54 61.1
Medtr0212s0050 Medicago truncatula HOM05D002660 ORTHO05D003902 3.5e-11 72.8 57 56.1
Psat4g178320 Pisum sativum HOM05D002660 ORTHO05D003902 3.5e-11 72.8 57 56.1
SGA_v2.0_scaffold245G44628 Striga asiatica HOM05D002660 ORTHO05D003902 3.5e-11 72.8 65 50.8
Actinidia02791 Actinidia chinensis HOM05D002660 ORTHO05D003902 5.9e-11 72.0 63 55.6
Solyc11g030920.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.0e-10 71.2 71 45.1
Lalb_Chr00c24g0406811 Lupinus albus HOM05D002660 ORTHO05D003902 1.3e-10 70.9 96 40.6
Ca_07940_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 1.7e-10 70.5 57 54.4
Ca_08791_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 1.7e-10 70.5 57 54.4
Ca_22174_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 1.7e-10 70.5 57 54.4
MBI05_g43410_MAGBIO Magnolia biondii HOM05D021484 ORTHO05D022418 1.7e-10 70.5 98 41.8
Nn1g09933 Nelumbo nucifera HOM05D002660 ORTHO05D003902 2.3e-10 70.1 121 32.2
Nn1g10009 Nelumbo nucifera HOM05D002660 ORTHO05D003902 2.9e-10 69.7 119 32.8
Ca_26184_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 5.0e-10 68.9 57 52.6
HPP92_006535 Vanilla planifolia HOM05D002660 ORTHO05D003902 6.6e-10 68.6 91 39.6
SHI02522 Sapria himalayana HOM05D002660 ORTHO05D003902 8.6e-10 68.2 54 64.8
SHI35938 Sapria himalayana HOM05D024615 ORTHO05D003902 8.6e-10 68.2 133 39.8
Cpa.g.sc263.8 Carica papaya HOM05D002660 ORTHO05D003902 1.1e-09 67.8 50 56.0
Hma1.2p1_1430F.1_g282940 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 4.3e-09 65.9 44 56.8
Lj2A1234T113 Lonicera japonica HOM05D002660 ORTHO05D003902 4.3e-09 65.9 162 32.7
ATMG00490 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 2.1e-08 63.5 41 61.0
Hma1.2p1_1529F.1_g289140 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 2.1e-08 63.5 44 54.5
arahy.Tifrunner.gnm1.ann1.PK4DTL Arachis hypogaea HOM05D012916 ORTHO05D014365 3.6e-08 62.8 40 57.5
CAN.G505.14 Capsicum annuum HOM05D000743 ORTHO05D000580 3.6e-08 62.8 76 44.7
MBI03_g45449_MAGBIO Magnolia biondii HOM05D017124 ORTHO05D017284 6.1e-08 62.0 114 30.7
Solyc09g056290.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 6.1e-08 62.0 82 39.0
CAN.G505.3 Capsicum annuum HOM05D002660 ORTHO05D003902 1.4e-07 60.8 66 42.4
SGA_v2.0_scaffold255G45438 Striga asiatica HOM05D002660 ORTHO05D003902 1.4e-07 60.8 99 37.4
TAR371G0124 Trochodendron aralioides HOM05D002660 ORTHO05D003902 1.4e-07 60.8 74 44.6
Nitab4.5_0010586g0020 Nicotiana tabacum HOM05D011968 ORTHO05D014241 1.8e-07 60.5 102 35.3
Sed0005295 Sechium edule HOM05D002660 ORTHO05D003902 2.3e-07 60.1 68 44.1
arahy.Tifrunner.gnm1.ann1.QE2SNE Arachis hypogaea HOM05D002660 ORTHO05D013121 4.0e-07 59.3 75 48.0
Nitab4.5_0000844g0150 Nicotiana tabacum HOM05D011968 ORTHO05D014241 5.2e-07 58.9 57 43.9
Lsat_1_v5_gn_2_61441 Lactuca sativa HOM05D002660 ORTHO05D003902 6.8e-07 58.5 44 52.3
Nitab4.5_0002093g0160 Nicotiana tabacum HOM05D011968 ORTHO05D014241 6.8e-07 58.5 47 48.9
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 1.2e-06 57.8 40 57.5
Solyc10g047100.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.0e-06 57.0 69 40.6
CSS0017389 Camellia sinensis var. sinensis HOM05D002660 ORTHO05D003902 2.6e-06 56.6 49 53.1
Nn1g10113 Nelumbo nucifera HOM05D002660 ORTHO05D003902 2.6e-06 56.6 46 54.3
Nitab4.5_0004300g0080 Nicotiana tabacum HOM05D011968 ORTHO05D014241 2.6e-06 56.6 106 34.0
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 4.4e-06 55.8 32 81.2
MBI05_g23324_MAGBIO Magnolia biondii HOM05D017124 ORTHO05D017284 4.4e-06 55.8 78 33.3
Lj2P1229T103 Lonicera japonica HOM05D002660 ORTHO05D003902 5.7e-06 55.5 38 63.2
CAN.G1.4 Capsicum annuum HOM05D002660 ORTHO05D003902 7.5e-06 55.1 125 30.4


User provided reference genes

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