Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G07671 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 3.8e-36 154.5 86 100.0
ATMG01080 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 3.8e-36 154.5 86 100.0
Thhalv10023008m.g Eutrema salsugineum HOM05D006320 ORTHO05D007069 4.2e-35 151.0 86 98.8
BolSC28t60384H Brassica oleracea HOM05D006320 ORTHO05D007069 2.1e-34 148.7 86 97.7
BolSC28t60392H Brassica oleracea HOM05D006320 ORTHO05D007069 2.1e-34 148.7 86 97.7
BolSC28t60418H Brassica oleracea HOM05D006320 ORTHO05D007069 2.1e-34 148.7 86 97.7
BraSC224t45817Z Brassica rapa HOM05D006320 ORTHO05D007069 2.1e-34 148.7 86 97.7
Aa31sc483G20 Aethionema arabicum HOM05D006320 ORTHO05D007069 8.8e-33 143.3 86 95.3
C01p34910 Brassica napus HOM05D006320 ORTHO05D007069 2.6e-32 141.7 82 96.3
BolC1t03457H Brassica oleracea HOM05D006320 ORTHO05D007069 2.6e-32 141.7 82 96.3
C01p34830 Brassica napus HOM05D006320 ORTHO05D007069 9.7e-32 139.8 83 94.0
RcHm_v2.0_MTg0498361 Rosa chinensis HOM05D006320 ORTHO05D007069 1.7e-31 139.0 85 91.8
AL5G20340 Arabidopsis lyrata HOM05D006320 ORTHO05D007069 3.5e-29 131.3 75 100.0
CARHR287930 Cardamine hirsuta HOM05D006320 ORTHO05D007069 4.5e-29 131.0 75 98.7
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 5.9e-29 130.6 85 88.2
PGR028G0009 Punica granatum HOM05D006320 ORTHO05D007069 1.3e-28 129.4 74 97.3
Lalb_Chr00c24g0406831 Lupinus albus HOM05D006320 ORTHO05D007069 5.0e-28 127.5 86 88.4
Lalb_Chr11g0070071 Lupinus albus HOM05D006320 ORTHO05D007069 5.0e-28 127.5 86 88.4
RhsimMtG0004200 Rhododendron simsii HOM05D006320 ORTHO05D007069 6.5e-28 127.1 85 87.1
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 1.1e-27 126.3 83 89.2
Lsat_1_v5_gn_8_111781 Lactuca sativa HOM05D006320 ORTHO05D007069 2.5e-27 125.2 83 89.2
ECA234G4202 Erigeron canadensis HOM05D006320 ORTHO05D007069 4.2e-27 124.4 85 84.7
arahy.Tifrunner.gnm1.ann1.5U23EP Arachis hypogaea HOM05D006320 ORTHO05D007069 7.2e-27 123.6 75 94.7
arahy.Tifrunner.gnm1.ann1.YTYD5C Arachis hypogaea HOM05D006320 ORTHO05D007069 7.2e-27 123.6 75 94.7
Phvul.005G088454 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 7.2e-27 123.6 75 94.7
CsaV3_UNG209120 Cucumis sativus L. HOM05D006320 ORTHO05D007069 9.4e-27 123.2 74 94.6
Hund27557 Selenicereus undatus HOM05D001750 ORTHO05D007069 1.2e-26 122.9 83 85.5
LjContig00439g0017906 Lotus japonicus HOM05D006320 ORTHO05D007069 1.6e-26 122.5 75 94.7
LjContig00446g0026709 Lotus japonicus HOM05D006320 ORTHO05D007069 1.6e-26 122.5 75 94.7
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 2.1e-26 122.1 74 94.6
Sed0021840 Sechium edule HOM05D006320 ORTHO05D007069 2.1e-26 122.1 74 94.6
Hma1.2p1_1191F.1_g265490 Hydrangea macrophylla HOM05D006320 ORTHO05D007069 8.0e-26 120.2 74 91.9
Ah.10g028420 Amaranthus hybridus HOM05D006320 ORTHO05D007069 1.0e-25 119.8 74 93.2
CANSAT16G0023 Cannabis sativa HOM05D006320 ORTHO05D007069 1.0e-25 119.8 74 93.2
Sc08g0004920 Simmondsia chinensis HOM05D006320 ORTHO05D007069 1.0e-25 119.8 85 82.4
Aqoxy12s033 Aquilegia oxysepala HOM05D006320 ORTHO05D007069 1.8e-25 119.0 75 93.3
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 3.0e-25 118.2 74 91.9
Dinv06715 Davidia involucrata HOM05D006320 ORTHO05D007069 4.0e-25 117.9 70 94.3
Phvul.011G124000 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 4.0e-25 117.9 74 90.5
SalBow1G1899 Salvia bowleyana HOM05D006320 ORTHO05D007069 4.0e-25 117.9 75 92.0
arahy.Tifrunner.gnm1.ann1.XSHW5Z Arachis hypogaea HOM05D006320 ORTHO05D007069 5.2e-25 117.5 69 94.2
SHI40315 Sapria himalayana HOM05D006320 ORTHO05D007069 8.8e-25 116.7 75 90.7
AUR62042330 Chenopodium quinoa HOM05D006320 ORTHO05D007069 1.2e-24 116.3 72 93.1
ECA041G0001 Erigeron canadensis HOM05D001750 ORTHO05D001825 1.2e-24 116.3 74 91.9
CDE02G4101 Ceratophyllum demersum HOM05D006320 ORTHO05D007069 1.5e-24 115.9 74 90.5
GSVIVG01029662001 Vitis vinifera HOM05D006320 ORTHO05D007069 2.0e-24 115.5 70 92.9
Gohir.D07G024400 Gossypium hirsutum HOM05D006320 ORTHO05D007069 2.6e-24 115.2 67 94.0
Lalb_Chr10g0093911 Lupinus albus HOM05D006320 ORTHO05D007069 7.5e-24 113.6 75 88.0
Nitab4.5_0002326g0030 Nicotiana tabacum HOM05D006320 ORTHO05D007069 7.5e-24 113.6 74 87.8
SHI36586 Sapria himalayana HOM05D000743 ORTHO05D000580 7.5e-24 113.6 74 86.5
Nitab4.5_0000172g0580 Nicotiana tabacum HOM05D006320 ORTHO05D007069 9.7e-24 113.2 74 87.8
SHI36772 Sapria himalayana HOM05D000743 ORTHO05D000580 9.7e-24 113.2 74 87.8
SHI36783 Sapria himalayana HOM05D000743 ORTHO05D000580 9.7e-24 113.2 74 87.8
SHI46272 Sapria himalayana HOM05D000743 ORTHO05D000580 3.7e-23 111.3 74 85.1
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 4.8e-23 110.9 71 91.5
Psat1g120760 Pisum sativum HOM05D012609 ORTHO05D007069 8.3e-23 110.2 67 92.5
SHI39753 Sapria himalayana HOM05D006320 ORTHO05D007069 8.3e-23 110.2 89 76.4
CANSAT21G1924 Cannabis sativa HOM05D006320 ORTHO05D007069 1.1e-22 109.8 71 90.1
SHI36018 Sapria himalayana HOM05D000743 ORTHO05D000580 1.1e-22 109.8 74 85.1
SHI39988 Sapria himalayana HOM05D006320 ORTHO05D007069 1.1e-22 109.8 72 88.9
SHI54307 Sapria himalayana HOM05D006320 ORTHO05D007069 1.1e-22 109.8 72 88.9
SHI35484 Sapria himalayana HOM05D006320 ORTHO05D007069 3.1e-22 108.2 72 88.9
SHI38846 Sapria himalayana HOM05D006320 ORTHO05D007069 3.1e-22 108.2 72 86.1
SHI48649 Sapria himalayana HOM05D006320 ORTHO05D007069 4.1e-22 107.8 72 87.5
SHI15099 Sapria himalayana HOM05D006320 ORTHO05D007069 5.3e-22 107.5 68 91.2
SHI37011 Sapria himalayana HOM05D000743 ORTHO05D000580 5.3e-22 107.5 74 82.4
SHI35237 Sapria himalayana HOM05D006320 ORTHO05D007069 9.1e-22 106.7 72 86.1
SHI36936 Sapria himalayana HOM05D000743 ORTHO05D000580 9.1e-22 106.7 74 82.4
SHI46360 Sapria himalayana HOM05D006320 ORTHO05D007069 9.1e-22 106.7 72 86.1
SHI53429 Sapria himalayana HOM05D006320 ORTHO05D007069 1.2e-21 106.3 72 87.5
Sopen12g013690 Solanum pennellii HOM05D006320 ORTHO05D007069 1.6e-21 105.9 74 85.1
PGSC0003DMG400002202 Solanum tuberosum HOM05D006320 ORTHO05D007069 1.6e-21 105.9 67 91.0
SHI34605 Sapria himalayana HOM05D001560 ORTHO05D003613 2.7e-21 105.1 73 83.6
SHI35327 Sapria himalayana HOM05D001560 ORTHO05D003613 2.7e-21 105.1 71 83.1
SHI36381 Sapria himalayana HOM05D001560 ORTHO05D003613 5.9e-21 104.0 72 80.6
Sc08g0004610 Simmondsia chinensis HOM05D006320 ORTHO05D007069 5.9e-21 104.0 85 75.3
SHI34615 Sapria himalayana HOM05D000743 ORTHO05D000580 1.0e-20 103.2 74 79.7
SHI53047 Sapria himalayana HOM05D006320 ORTHO05D007069 1.0e-20 103.2 72 84.7
SHI37852 Sapria himalayana HOM05D006320 ORTHO05D007069 1.3e-20 102.8 75 82.7
CAN.G547.1 Capsicum annuum HOM05D006320 ORTHO05D007069 2.2e-20 102.1 65 90.8
SGA_v2.0_scaffold255G45504 Striga asiatica HOM05D006320 ORTHO05D007069 2.9e-20 101.7 60 93.3
SalBow6G3944 Salvia bowleyana HOM05D006320 ORTHO05D007069 5.0e-20 100.9 75 81.3
SHI27343 Sapria himalayana HOM05D006320 ORTHO05D007069 5.0e-20 100.9 72 83.3
SalBow8G4348 Salvia bowleyana HOM05D006320 ORTHO05D007069 6.5e-20 100.5 75 84.0
SHI49662 Sapria himalayana HOM05D006320 ORTHO05D007069 6.5e-20 100.5 89 73.0
Nitab4.5_0001152g0710 Nicotiana tabacum HOM05D006320 ORTHO05D007069 8.5e-20 100.1 70 80.0
ATMG00040 Arabidopsis thaliana HOM05D010793 ORTHO05D011945 1.5e-19 99.4 53 100.0
CARHR282610 Cardamine hirsuta HOM05D010793 ORTHO05D011945 1.5e-19 99.4 53 100.0
SHI42051 Sapria himalayana HOM05D006320 ORTHO05D007069 1.5e-19 99.4 89 70.8
SHI50161 Sapria himalayana HOM05D006320 ORTHO05D007069 1.5e-19 99.4 89 70.8
SHI52535 Sapria himalayana HOM05D006320 ORTHO05D007069 1.5e-19 99.4 65 84.6
SHI34625 Sapria himalayana HOM05D000743 ORTHO05D000580 1.9e-19 99.0 68 82.4
Lsat_1_v5_gn_7_80061 Lactuca sativa HOM05D006320 ORTHO05D007069 2.5e-19 98.6 83 72.3
SHI37138 Sapria himalayana HOM05D006320 ORTHO05D007069 9.4e-19 96.7 65 83.1
SHI39076 Sapria himalayana HOM05D006320 ORTHO05D007069 9.4e-19 96.7 72 80.6
SHI41242 Sapria himalayana HOM05D006320 ORTHO05D007069 9.4e-19 96.7 70 82.9
SHI34993 Sapria himalayana HOM05D006320 ORTHO05D007069 1.6e-18 95.9 62 87.1
SHI49633 Sapria himalayana HOM05D006320 ORTHO05D007069 2.1e-18 95.5 65 81.5
SHI35481 Sapria himalayana HOM05D000890 ORTHO05D007069 2.7e-18 95.1 58 91.4
Nitab4.5_0002418g0080 Nicotiana tabacum HOM05D006320 ORTHO05D007069 3.6e-18 94.7 74 73.0
SHI50287 Sapria himalayana HOM05D006320 ORTHO05D007069 6.1e-18 94.0 61 85.2
SHI38465 Sapria himalayana HOM05D000743 ORTHO05D000580 8.0e-18 93.6 103 60.2
SHI51203 Sapria himalayana HOM05D006320 ORTHO05D007069 8.0e-18 93.6 59 88.1
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 1.0e-17 93.2 60 86.7
SHI36574 Sapria himalayana HOM05D006320 ORTHO05D007069 1.0e-17 93.2 61 88.5
SHI39778 Sapria himalayana HOM05D006320 ORTHO05D007069 1.4e-17 92.8 62 85.5
SHI47782 Sapria himalayana HOM05D006320 ORTHO05D007069 1.8e-17 92.4 59 86.4
CAN.G761.5 Capsicum annuum HOM05D012609 ORTHO05D007069 2.3e-17 92.0 63 84.1
SHI47632 Sapria himalayana HOM05D006320 ORTHO05D007069 3.0e-17 91.7 59 86.4
SEGI_10818 Sequoiadendron giganteum HOM05D006320 ORTHO05D007069 3.0e-17 91.7 74 78.4
SHI38101 Sapria himalayana HOM05D000743 ORTHO05D000580 5.2e-17 90.9 64 78.1
SHI37168 Sapria himalayana HOM05D006320 ORTHO05D007069 6.8e-17 90.5 65 80.0
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.2e-16 89.7 58 84.5
SHI36370 Sapria himalayana HOM05D006320 ORTHO05D007069 2.6e-16 88.6 61 83.6
SHI40933 Sapria himalayana HOM05D000743 ORTHO05D000580 9.8e-16 86.7 61 80.3
CiPaw.06G021700 Carya illinoinensis HOM05D006320 ORTHO05D007069 6.3e-15 84.0 56 83.9
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 2.4e-14 82.0 65 72.3
Haze_26208 Corylus avellana HOM05D006320 ORTHO05D007069 9.1e-14 80.1 71 66.2
Haze_26209 Corylus avellana HOM05D006320 ORTHO05D007069 9.1e-14 80.1 71 66.2
Cre17.g731950 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 2.0e-13 79.0 72 59.7
Cre17.g732000 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 2.0e-13 79.0 72 59.7
SHI25012 Sapria himalayana HOM05D006320 ORTHO05D007069 2.0e-13 79.0 75 65.3
SHI41650 Sapria himalayana HOM05D000743 ORTHO05D000580 2.7e-13 78.6 54 81.5
SHI39478 Sapria himalayana HOM05D006320 ORTHO05D007069 5.9e-13 77.4 70 65.7
TAR022G0003 Trochodendron aralioides HOM05D006320 ORTHO05D007069 7.7e-13 77.0 72 63.9
HanXRQChr08g0236091 Helianthus annuus HOM05D006320 ORTHO05D007069 1.0e-12 76.6 76 65.8
HanXRQMTg0579331 Helianthus annuus HOM05D006320 ORTHO05D007069 1.0e-12 76.6 76 65.8
SHI36078 Sapria himalayana HOM05D000743 ORTHO05D007069 1.7e-12 75.9 49 85.7
Manes.04G128250 Manihot esculenta HOM05D006320 ORTHO05D007069 2.3e-12 75.5 46 91.3
Peaxi162Scf00828g00512 Petunia axillaris HOM05D006320 ORTHO05D007069 2.9e-12 75.1 67 68.7
Peaxi162Scf03787g00001 Petunia axillaris HOM05D006320 ORTHO05D007069 2.9e-12 75.1 67 68.7
Nitab4.5_0000172g1000 Nicotiana tabacum HOM05D006320 ORTHO05D007069 3.8e-12 74.7 68 67.6
HanXRQChr16g0504511 Helianthus annuus HOM05D006320 ORTHO05D007069 5.0e-12 74.3 76 64.5
C04p27420 Brassica napus HOM05D006320 ORTHO05D007069 6.6e-12 73.9 47 89.4
SHI39121 Sapria himalayana HOM05D000743 ORTHO05D000580 8.6e-12 73.6 49 81.6
Nitab4.5_0002404g0040 Nicotiana tabacum HOM05D006320 ORTHO05D007069 2.5e-11 72.0 74 63.5
Nitab4.5_0005246g0040 Nicotiana tabacum HOM05D007924 ORTHO05D007069 2.5e-11 72.0 53 77.4
SHI51623 Sapria himalayana HOM05D006320 ORTHO05D007069 4.2e-11 71.2 65 66.2
CiPaw.04G019500 Carya illinoinensis HOM05D006320 ORTHO05D007069 2.1e-10 68.9 72 62.5
Lsat_1_v5_gn_3_89840 Lactuca sativa HOM05D006320 ORTHO05D007069 2.1e-10 68.9 54 74.1
Nitab4.5_0001152g0490 Nicotiana tabacum HOM05D006320 ORTHO05D007069 2.1e-10 68.9 64 68.8
EL10Ac6g14143 Beta vulgaris HOM05D010007 ORTHO05D007069 1.8e-09 65.9 41 90.2
Os01g0899275 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 2.3e-09 65.5 40 87.5
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 4.0e-09 64.7 47 76.6
SHI43389 Sapria himalayana HOM05D000743 ORTHO05D000580 4.0e-09 64.7 63 63.5
Haze_27774 Corylus avellana HOM05D006320 ORTHO05D007069 1.5e-08 62.8 71 47.9
Haze_27775 Corylus avellana HOM05D006320 ORTHO05D007069 1.5e-08 62.8 71 47.9
TAR424G0002 Trochodendron aralioides HOM05D006320 ORTHO05D007069 2.0e-08 62.4 58 62.1
Mapoly3785s0001 Marchantia polymorpha HOM05D006320 ORTHO05D007069 2.6e-08 62.0 70 55.7
Os01g0899350 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 2.6e-08 62.0 40 82.5
Aa31csc464G80 Aethionema arabicum HOM05D010793 ORTHO05D007069 5.7e-08 60.8 34 94.1
Nitab4.5_0010033g0150 Nicotiana tabacum HOM05D006320 ORTHO05D007069 9.8e-08 60.1 43 79.1
Peaxi162Scf00446g00053 Petunia axillaris HOM05D006320 ORTHO05D007069 1.3e-07 59.7 33 93.9
Solyc10g049590.1 Solanum lycopersicum HOM05D000216 ORTHO05D007069 4.9e-07 57.8 41 80.5
ClCG08G001280 Citrullus lanatus HOM05D006320 ORTHO05D007069 8.3e-07 57.0 38 81.6
Nitab4.5_0005853g0090 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.1e-06 56.6 43 72.1
SHI31532 Sapria himalayana HOM05D006320 ORTHO05D007069 1.1e-06 56.6 45 71.1
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 1.8e-06 55.8 34 88.2
SHI15041 Sapria himalayana HOM05D006320 ORTHO05D007069 7.0e-06 53.9 44 70.5


User provided reference genes

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