Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 7.4e-155 550.4 266 100.0
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 7.4e-155 550.4 266 100.0
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 8.2e-154 547.0 266 99.2
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 8.2e-154 547.0 266 99.2
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 8.2e-154 547.0 266 99.2
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 8.2e-154 547.0 266 99.2
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 8.2e-154 547.0 266 99.2
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 8.2e-154 547.0 266 99.2
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 8.2e-154 547.0 266 99.2
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 8.2e-154 547.0 266 99.2
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 5.7e-147 524.2 266 96.2
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 9.7e-147 523.5 266 96.6
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 6.3e-146 520.8 266 95.5
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 1.1e-145 520.0 266 95.5
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 5.3e-145 517.7 266 94.7
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 5.3e-145 517.7 266 94.7
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 1.5e-144 516.2 263 96.2
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 1.0e-143 513.5 264 95.8
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 1.3e-143 513.1 266 94.7
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 2.2e-143 512.3 266 95.5
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 5.0e-143 511.1 264 95.5
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 8.5e-143 510.4 263 95.1
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 8.5e-143 510.4 266 95.5
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 1.1e-142 510.0 266 95.1
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 1.1e-142 510.0 266 95.1
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 5.5e-142 507.7 266 94.0
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 5.5e-142 507.7 266 94.0
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 1.6e-141 506.1 266 94.7
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 1.6e-141 506.1 266 94.7
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 3.0e-140 501.9 266 93.6
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 5.1e-140 501.1 266 94.0
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 1.3e-138 496.5 266 92.9
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 4.8e-138 494.6 266 92.9
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 5.3e-137 491.1 266 91.0
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 1.2e-136 490.0 251 96.0
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 5.9e-136 487.6 251 95.6
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 1.3e-135 486.5 250 96.0
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 1.7e-135 486.1 250 95.6
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 2.2e-135 485.7 255 94.5
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 7.2e-134 480.7 266 90.6
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 4.7e-133 478.0 250 94.8
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 5.7e-131 471.1 265 89.1
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-130 469.9 263 86.3
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 5.3e-129 464.5 239 95.8
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 7.0e-129 464.2 243 93.8
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 7.0e-129 464.2 243 93.8
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 2.6e-128 462.2 238 95.0
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 7.7e-128 460.7 238 94.5
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 5.0e-127 458.0 265 88.3
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 8.2e-122 440.7 264 85.6
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 1.3e-119 433.3 209 99.5
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 2.2e-119 432.6 262 83.2
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 8.0e-117 424.1 261 82.8
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 5.7e-115 417.9 250 85.6
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 3.1e-113 412.1 211 95.3
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 3.1e-113 412.1 211 95.3
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 3.6e-109 398.7 213 93.4
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 6.8e-108 394.4 209 93.3
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 1.2e-107 393.7 251 80.9
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 2.0e-104 382.9 202 94.6
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.6e-103 377.9 257 77.4
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 4.3e-102 375.2 209 90.9
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 8.3e-98 360.9 209 86.1
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 1.0e-95 354.0 187 93.6
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.6e-87 324.3 184 87.5
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 1.9e-78 296.6 161 91.3
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 3.1e-76 289.3 249 65.5
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 5.2e-76 288.5 159 91.2
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 5.2e-76 288.5 156 91.7
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 2.6e-75 286.2 148 95.3
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 2.3e-71 273.1 145 92.4
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 2.3e-71 273.1 145 91.7
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 6.6e-71 271.6 148 89.2
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 2.5e-70 269.6 213 67.1
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 7.3e-70 268.1 150 90.7
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 2.1e-69 266.5 279 48.7
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.2e-67 260.8 198 72.2
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 3.4e-67 259.2 130 96.9
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 8.1e-61 238.0 119 95.0
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 1.8e-60 236.9 122 93.4
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 2.7e-56 223.0 120 94.2
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.9e-56 221.5 160 73.8
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.4e-52 209.9 116 87.9
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 5.3e-52 208.8 108 93.5
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 6.4e-50 201.8 103 95.1
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 2.1e-48 196.8 117 87.2
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 2.1e-48 196.8 101 96.0
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 1.3e-47 194.1 101 90.1
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 1.6e-45 187.2 105 89.5
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 5.3e-44 182.2 85 100.0
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 5.8e-43 178.7 210 49.0
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 7.6e-43 178.3 165 60.6
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 1.5e-38 164.1 258 35.7
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.4e-38 161.8 184 52.2
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 1.8e-36 157.1 87 88.5
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 1.5e-35 154.1 81 91.4
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.2e-32 144.4 107 71.0
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 7.9e-32 141.7 82 87.8
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 1.8e-31 140.6 98 74.5
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.9e-31 139.4 149 55.0
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 4.1e-28 129.4 80 80.0
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 5.3e-28 129.0 75 84.0
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 6.5e-26 122.1 154 48.7
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 4.2e-25 119.4 58 98.3
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 1.6e-24 117.5 62 88.7
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.1e-24 117.1 79 75.9
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 3.9e-23 112.8 68 79.4
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 2.4e-20 103.6 172 42.4
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 3.1e-20 103.2 56 87.5
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-18 97.8 63 76.2
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 5.5e-17 92.4 65 73.8
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 5.5e-17 92.4 48 87.5
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 1.2e-16 91.3 119 46.2
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.6e-16 90.9 86 59.3
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 6.1e-16 89.0 61 67.2
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 3.3e-14 83.2 84 52.4
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 9.7e-14 81.6 53 84.9
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-13 81.3 39 89.7
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.7e-13 79.7 53 81.1
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 6.3e-13 79.0 41 82.9
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 6.3e-13 79.0 65 60.0
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 1.4e-12 77.8 59 71.2
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.0e-12 75.5 56 73.2
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 3.5e-11 73.2 35 91.4
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 1.1e-09 68.2 118 36.4
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 3.2e-09 66.6 29 100.0
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 4.2e-09 66.2 31 93.5
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.5e-09 65.9 31 90.3
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.2e-08 64.7 33 84.8
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 4.0e-07 59.7 32 84.4
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 4.0e-07 59.7 30 83.3
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 1.2e-06 58.2 31 83.9
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.5e-06 57.8 68 48.5


User provided reference genes

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