Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATMG00670 Arabidopsis thaliana HOM05D002965 ORTHO05D011945 3.8e-146 521.5 276 100.0
CARHR283030 Cardamine hirsuta HOM05D002965 ORTHO05D011945 4.3e-73 278.9 173 93.1
Aa31csc464G90 Aethionema arabicum HOM05D002965 ORTHO05D011945 2.8e-48 196.4 276 50.4
BcaC09g49585 Brassica carinata HOM05D008814 ORTHO05D010812 2.7e-43 179.9 211 53.6
BraSC48t46254Z Brassica rapa HOM05D002965 ORTHO05D010536 1.7e-40 170.6 179 62.6
BraSC159t45718Z Brassica rapa HOM05D002965 ORTHO05D011945 8.2e-40 168.3 179 62.0
BNapus_Darmor_BZH_scaffold_234p00050 Brassica napus HOM05D002965 ORTHO05D010536 3.1e-39 166.4 210 54.8
BolSC28t60357H Brassica oleracea HOM05D002965 ORTHO05D010536 6.9e-39 165.2 180 61.1
Thhalv10022998m.g Eutrema salsugineum HOM05D002965 ORTHO05D011945 5.5e-36 155.6 209 55.5
CARHR283270 Cardamine hirsuta HOM05D002965 ORTHO05D011945 7.2e-28 128.6 161 54.7
AT2G07674 Arabidopsis thaliana HOM05D002965 ORTHO05D010536 1.6e-27 127.5 198 48.5
BolC1t03449H Brassica oleracea HOM05D010793 ORTHO05D011945 1.5e-25 120.9 128 60.9
BcaC08g43717 Brassica carinata HOM05D010793 ORTHO05D011945 6.3e-24 115.5 155 53.5
ATMG01020 Arabidopsis thaliana HOM05D002965 ORTHO05D011945 8.2e-24 115.2 159 50.9
BolSC28t60431H Brassica oleracea HOM05D010793 ORTHO05D011945 2.9e-21 106.7 138 54.3
BraSC177t45755Z Brassica rapa HOM05D010793 ORTHO05D011945 3.2e-20 103.2 149 53.0
BraSC48t46343Z Brassica rapa HOM05D010793 ORTHO05D011945 3.2e-20 103.2 149 53.0
BcaB06g27867 Brassica carinata HOM05D010793 ORTHO05D011945 1.0e-18 98.2 253 39.1
BcaC05g26886 Brassica carinata HOM05D002965 ORTHO05D011945 1.4e-18 97.8 104 57.7
Thhalv10023135m.g Eutrema salsugineum HOM05D002965 ORTHO05D010536 3.7e-16 89.7 122 56.6
BolSC28t60327H Brassica oleracea HOM05D010793 ORTHO05D011945 6.5e-13 79.0 140 47.9
AL3G44420 Arabidopsis lyrata HOM05D002965 ORTHO05D010536 1.1e-12 78.2 126 46.0
C01p34900 Brassica napus HOM05D019804 ORTHO05D016577 1.5e-09 67.8 79 46.8
BolC1t03456H Brassica oleracea HOM05D019804 ORTHO05D016577 1.5e-09 67.8 79 46.8
C01p34820 Brassica napus HOM05D019804 ORTHO05D016577 3.4e-09 66.6 79 48.1
AL5G20250 Arabidopsis lyrata HOM05D001987 ORTHO05D016577 7.5e-09 65.5 87 46.0
BraSC48t46235Z Brassica rapa HOM05D019804 ORTHO05D016577 1.3e-08 64.7 64 50.0
BraSC48t46323Z Brassica rapa HOM05D019804 ORTHO05D016577 1.3e-08 64.7 64 50.0
C01p34830 Brassica napus HOM05D006320 ORTHO05D007069 2.2e-08 63.9 81 50.6
AT2G07629 Arabidopsis thaliana HOM05D019804 ORTHO05D016577 1.4e-07 61.2 88 44.3
ATMG00040 Arabidopsis thaliana HOM05D010793 ORTHO05D011945 1.4e-07 61.2 127 44.9
CARHR282610 Cardamine hirsuta HOM05D010793 ORTHO05D011945 1.4e-07 61.2 127 44.9
Aa31csc1081G50 Aethionema arabicum HOM05D002965 ORTHO05D017245 7.7e-06 55.5 79 50.6
arahy.Tifrunner.gnm1.ann1.KJ11LV Arachis hypogaea HOM05D001750 ORTHO05D001825 7.7e-06 55.5 44 65.9


User provided reference genes

Program Settings