Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 3.8e-100 368.2 193 100.0
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 4.3e-96 354.8 193 96.4
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 9.6e-96 353.6 193 96.9
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 2.8e-95 352.1 189 96.8
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 3.4e-85 318.5 189 88.9
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 3.4e-85 318.5 189 88.9
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.4e-83 313.2 189 87.3
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 1.2e-82 310.1 189 87.3
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 1.2e-82 310.1 189 87.3
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 3.5e-82 308.5 189 87.8
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 3.5e-82 308.5 189 87.8
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 8.7e-81 303.9 189 85.2
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 7.4e-80 300.8 189 85.2
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 9.7e-80 300.4 193 84.5
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 9.7e-80 300.4 193 84.5
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 9.7e-80 300.4 193 84.5
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 1.1e-78 297.0 189 83.6
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 1.1e-78 297.0 193 83.9
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 1.8e-78 296.2 182 85.7
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 1.8e-78 296.2 182 85.7
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 6.9e-78 294.3 158 96.8
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 1.2e-77 293.5 189 84.1
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 4.5e-77 291.6 189 82.5
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 1.3e-76 290.0 189 83.1
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 1.3e-76 290.0 189 83.1
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 1.3e-76 290.0 179 85.5
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 2.9e-76 288.9 185 83.8
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 2.9e-76 288.9 185 83.8
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 2.9e-76 288.9 189 83.6
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 2.9e-76 288.9 189 83.6
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 2.9e-76 288.9 189 83.6
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 3.8e-76 288.5 189 83.1
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 8.5e-76 287.3 179 85.5
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 1.9e-75 286.2 186 82.3
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 2.5e-75 285.8 189 83.1
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 5.5e-75 284.6 189 81.5
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 9.4e-75 283.9 189 81.0
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 1.6e-74 283.1 189 81.0
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.6e-74 281.6 171 87.1
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 6.1e-74 281.2 189 81.5
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 2.3e-73 279.3 189 80.4
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 2.3e-73 279.3 189 80.4
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 8.8e-73 277.3 180 82.8
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.1e-72 276.9 159 91.2
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 4.8e-71 271.6 182 80.2
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 6.3e-71 271.2 171 84.2
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 1.1e-70 270.4 162 88.3
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 1.8e-70 269.6 185 80.5
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 1.8e-70 269.6 185 80.5
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 1.8e-70 269.6 185 80.5
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 1.0e-68 263.8 185 78.4
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 7.9e-66 254.2 152 88.8
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.0e-65 253.8 150 89.3
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.0e-65 253.8 150 89.3
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 3.9e-65 251.9 178 75.3
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.1e-64 250.4 182 73.6
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 7.4e-64 247.7 132 96.2
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 7.4e-64 247.7 132 96.2
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 1.7e-63 246.5 145 88.3
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 1.5e-61 240.0 140 87.9
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 5.9e-61 238.0 158 81.6
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 1.3e-60 236.9 147 85.0
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 1.3e-60 236.9 132 91.7
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 1.4e-57 226.9 146 81.5
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 1.8e-57 226.5 143 81.8
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.0e-57 225.7 140 82.1
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 3.1e-54 215.7 128 89.1
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 3.1e-54 215.7 128 89.1
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 6.5e-52 208.0 188 65.4
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 6.5e-52 208.0 140 79.3
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 1.5e-51 206.8 133 80.5
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.8e-49 199.9 160 70.0
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 6.8e-49 198.0 123 83.7
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 4.4e-48 195.3 160 69.4
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 7.5e-48 194.5 139 75.5
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 5.3e-46 188.3 113 86.7
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 2.1e-42 176.4 97 91.8
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 8.0e-42 174.5 115 81.7
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 3.0e-41 172.6 99 89.9
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 4.9e-39 165.2 98 85.7
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 7.7e-37 157.9 89 89.9
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 1.7e-36 156.8 86 94.2
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 5.0e-36 155.2 97 86.6
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 2.0e-32 143.3 84 89.3
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.4e-32 142.5 88 86.4
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 9.5e-27 124.4 80 80.0
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 1.2e-26 124.0 75 88.0
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 1.2e-24 117.5 110 60.9
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 8.3e-23 111.3 74 78.4
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 8.3e-23 111.3 74 78.4
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 2.0e-21 106.7 81 72.8
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 4.6e-21 105.5 64 85.9
Nitab4.5_0000068g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.3e-20 103.2 68 83.8
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.1e-19 100.9 65 76.9
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 1.9e-19 100.1 79 73.4
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 2.5e-19 99.8 68 77.9
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 4.7e-18 95.5 73 69.9
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-17 94.4 76 67.1
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 2.0e-16 90.1 65 72.3
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 3.7e-15 85.9 47 91.5
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 9.2e-14 81.3 68 63.2
Nitab4.5_0000034g0140 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.5e-13 79.3 54 74.1
Nitab4.5_0000172g2020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.1e-11 74.3 81 56.8
Peaxi162Scf00673g00229 Petunia axillaris HOM05D011380 ORTHO05D016005 1.9e-11 73.6 43 90.7
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.3e-09 66.6 45 73.3
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 6.8e-09 65.1 39 79.5
Potri.007G062422 Populus trichocarpa HOM05D007533 ORTHO05D010378 6.8e-09 65.1 57 68.4
Solyc02g021390.1 Solanum lycopersicum HOM05D007533 ORTHO05D016005 6.4e-07 58.5 38 81.6


User provided reference genes

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