Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G07718 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 2.6e-175 618.6 314 100.0
ATMG00590 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 2.6e-175 618.6 314 100.0
CARHR282960 Cardamine hirsuta HOM05D014754 ORTHO05D017434 5.5e-117 424.9 241 93.8
AT2G07773 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 2.4e-59 233.4 263 53.6
AT2G07681 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 5.3e-35 152.5 161 53.4
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 2.6e-26 123.6 214 44.9
CARHR283170 Cardamine hirsuta HOM05D014754 ORTHO05D017434 5.9e-26 122.5 187 46.0
ATMG00910 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 7.7e-26 122.1 192 44.3
AT2G07727 Arabidopsis thaliana HOM05D002864 ORTHO05D007972 5.9e-18 95.9 47 91.5
ATMG00220 Arabidopsis thaliana HOM05D002864 ORTHO05D007972 5.9e-18 95.9 47 91.5
A04p09430 Brassica napus HOM05D002864 ORTHO05D007972 5.9e-18 95.9 47 91.5
BolSC28t60373H Brassica oleracea HOM05D002864 ORTHO05D007972 5.9e-18 95.9 47 91.5
BraSC159t45732Z Brassica rapa HOM05D002864 ORTHO05D007972 5.9e-18 95.9 47 91.5
BraSC48t46333Z Brassica rapa HOM05D002864 ORTHO05D007972 5.9e-18 95.9 47 91.5
Thhalv10001270m.g Eutrema salsugineum HOM05D002864 ORTHO05D007972 5.9e-18 95.9 47 91.5
Hma1.2p1_0676F.1_g201980 Hydrangea macrophylla HOM05D002864 ORTHO05D007972 7.7e-18 95.5 47 89.4
Nn1g09936 Nelumbo nucifera HOM05D002864 ORTHO05D007972 7.7e-18 95.5 47 89.4
Nn1g10178 Nelumbo nucifera HOM05D002864 ORTHO05D007972 7.7e-18 95.5 47 89.4
CANSAT16G0027 Cannabis sativa HOM05D002864 ORTHO05D007972 1.3e-17 94.7 47 87.2
Aa31csc705G10 Aethionema arabicum HOM05D002864 ORTHO05D007972 1.7e-17 94.4 47 89.4
RcHm_v2.0_MTg0499071 Rosa chinensis HOM05D002864 ORTHO05D007972 5.0e-17 92.8 47 87.2
Gorai.001G162000 Gossypium raimondii HOM05D002864 ORTHO05D007972 6.5e-17 92.4 47 87.2
Lalb_Chr00c06g0404551 Lupinus albus HOM05D002864 ORTHO05D007972 6.5e-17 92.4 47 87.2
Lalb_Chr00c21g0405421 Lupinus albus HOM05D002864 ORTHO05D007972 6.5e-17 92.4 47 87.2
Lalb_Chr00c24g0407141 Lupinus albus HOM05D002864 ORTHO05D007972 6.5e-17 92.4 47 87.2
Lalb_Chr11g0070121 Lupinus albus HOM05D002864 ORTHO05D007972 6.5e-17 92.4 47 87.2
PGR028G0001 Punica granatum HOM05D002864 ORTHO05D007972 1.1e-16 91.7 47 85.1
Sed0001516 Sechium edule HOM05D002864 ORTHO05D007972 1.1e-16 91.7 62 71.0
unitig_87.g28007 Utricularia gibba HOM05D002864 ORTHO05D007972 1.1e-16 91.7 47 85.1
HanXRQMTg0579511 Helianthus annuus HOM05D002864 ORTHO05D007972 1.9e-16 90.9 47 83.0
CsaV3_UNG209910 Cucumis sativus L. HOM05D002864 ORTHO05D007972 2.5e-16 90.5 62 71.0
VMungo0647G2443 Vigna mungo HOM05D002864 ORTHO05D007972 2.5e-16 90.5 47 83.0
CAN.G1321.7 Capsicum annuum HOM05D002864 ORTHO05D007972 3.2e-16 90.1 47 85.1
CAN.G539.2 Capsicum annuum HOM05D002864 ORTHO05D007972 3.2e-16 90.1 47 85.1
Psat6g041400 Pisum sativum HOM05D002864 ORTHO05D007972 3.2e-16 90.1 47 85.1
SabraMtG0009000 Salix brachista HOM05D002864 ORTHO05D007972 3.2e-16 90.1 47 85.1
Zm00001eb126090 Zea mays HOM05D002864 ORTHO05D007972 3.2e-16 90.1 47 85.1
Zm00001eb187520 Zea mays HOM05D002864 ORTHO05D007972 3.2e-16 90.1 47 85.1
Zm00001eb436400 Zea mays HOM05D002864 ORTHO05D007972 3.2e-16 90.1 47 85.1
Zm00001eb438850 Zea mays HOM05D002864 ORTHO05D007972 3.2e-16 90.1 47 85.1
Zm00001eb440640 Zea mays HOM05D002864 ORTHO05D007972 3.2e-16 90.1 47 85.1
SHI50326 Sapria himalayana HOM05D002864 ORTHO05D007972 5.5e-16 89.4 47 83.0
SHI54530 Sapria himalayana HOM05D002864 ORTHO05D007972 5.5e-16 89.4 47 83.0
Solyc09g050020.3 Solanum lycopersicum HOM05D002864 ORTHO05D007972 9.4e-16 88.6 47 83.0
Solyc00g500240.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 2.1e-15 87.4 42 92.9
Solyc00g500364.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 2.1e-15 87.4 42 92.9
Peaxi162Scf00296g00719 Petunia axillaris HOM05D002864 ORTHO05D007972 2.7e-15 87.0 62 67.7
LjContig00315g0014259 Lotus japonicus HOM05D002864 ORTHO05D007972 7.9e-15 85.5 45 82.2
LjContig00439g0009771 Lotus japonicus HOM05D002864 ORTHO05D007972 7.9e-15 85.5 45 82.2
LjContig00446g0017432 Lotus japonicus HOM05D002864 ORTHO05D007972 7.9e-15 85.5 45 82.2
SHI54776 Sapria himalayana HOM05D002864 ORTHO05D007972 7.9e-15 85.5 62 64.5
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 5.2e-14 82.8 53 71.7
DCAR_032458 Daucus carota HOM05D002864 ORTHO05D007972 6.7e-14 82.4 47 78.7
Oeu043609.1 Olea europaea HOM05D002864 ORTHO05D007972 1.3e-12 78.2 58 65.5
Lj2P1221T104 Lonicera japonica HOM05D014754 ORTHO05D017434 3.7e-12 76.6 105 45.7
Nitab4.5_0029129g0010 Nicotiana tabacum HOM05D002864 ORTHO05D007972 4.8e-12 76.3 62 62.9
FvH4_2g28560 Fragaria vesca HOM05D014754 ORTHO05D017434 3.8e-09 66.6 171 33.9
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 6.5e-09 65.9 36 94.4
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 6.5e-09 65.9 36 94.4
Ca_03774_v3 Cicer arietinum L. HOM05D007924 ORTHO05D010328 1.1e-08 65.1 221 30.8
Cc00_g01730 Coffea canephora HOM05D014754 ORTHO05D017434 1.1e-08 65.1 142 34.5
Lj2A1231T102 Lonicera japonica HOM05D000743 ORTHO05D000580 1.1e-08 65.1 162 38.3
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 1.2e-07 61.6 34 94.1
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 1.2e-07 61.6 34 94.1
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 1.2e-07 61.6 34 94.1
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 1.2e-07 61.6 34 94.1
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 1.2e-07 61.6 34 94.1
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 1.2e-07 61.6 34 94.1
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 1.2e-07 61.6 34 94.1
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 1.2e-07 61.6 34 94.1
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 1.2e-07 61.6 34 94.1
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 1.2e-07 61.6 34 94.1
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 1.2e-07 61.6 34 94.1
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 1.2e-07 61.6 34 94.1
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 1.2e-07 61.6 72 54.2
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 1.2e-07 61.6 72 54.2
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 1.2e-07 61.6 34 94.1
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 4.7e-07 59.7 35 91.4
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 6.1e-07 59.3 72 52.8
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 6.1e-07 59.3 72 52.8
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 6.1e-07 59.3 72 52.8
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 6.1e-07 59.3 72 52.8
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 6.1e-07 59.3 72 52.8
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 6.1e-07 59.3 72 52.8
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 6.1e-07 59.3 72 52.8
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 6.1e-07 59.3 72 52.8
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 1.0e-06 58.5 35 88.6
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 1.4e-06 58.2 72 51.4
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.4e-06 58.2 41 75.6
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 1.4e-06 58.2 72 51.4
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 1.4e-06 58.2 72 51.4
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 1.8e-06 57.8 34 91.2
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 2.3e-06 57.4 73 50.7
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 2.3e-06 57.4 41 75.6
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 4.0e-06 56.6 34 82.4
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.0e-06 56.6 41 75.6
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.0e-06 56.6 41 73.2
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 4.0e-06 56.6 73 52.1
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 4.0e-06 56.6 73 52.1
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 5.2e-06 56.2 73 52.1
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 8.8e-06 55.5 72 50.0


User provided reference genes

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