Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATMG00490 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 4.5e-58 227.6 108 100.0
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 8.8e-14 80.5 79 58.2
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 4.1e-11 71.6 39 82.1
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 2.6e-10 68.9 39 79.5
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 4.5e-10 68.2 39 76.9
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 5.9e-10 67.8 39 76.9
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 5.9e-10 67.8 39 76.9
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 5.9e-10 67.8 39 76.9
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 5.9e-10 67.8 39 76.9
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 5.9e-10 67.8 39 76.9
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 1.7e-09 66.2 41 68.3
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 2.9e-09 65.5 39 71.8
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 3.8e-09 65.1 39 64.1
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 6.5e-09 64.3 38 71.1
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 1.9e-08 62.8 37 67.6
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 2.5e-08 62.4 37 70.3
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 2.5e-08 62.4 37 70.3
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 2.5e-08 62.4 41 63.4
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.5e-08 62.4 46 63.0
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.5e-08 62.4 42 66.7
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 3.2e-08 62.0 49 51.0
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 3.2e-08 62.0 49 51.0
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.2e-08 62.0 39 61.5
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.2e-08 62.0 39 61.5
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 4.2e-08 61.6 38 63.2
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 7.2e-08 60.8 37 67.6
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 7.2e-08 60.8 37 67.6
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 7.2e-08 60.8 37 67.6
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 7.2e-08 60.8 39 69.2
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 9.4e-08 60.5 36 66.7
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 9.4e-08 60.5 41 61.0
Oeu021479.1 Olea europaea HOM05D002660 ORTHO05D011706 9.4e-08 60.5 46 54.3
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.2e-07 60.1 36 72.2
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.2e-07 60.1 36 72.2
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 1.2e-07 60.1 36 72.2
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 1.2e-07 60.1 36 72.2
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 1.2e-07 60.1 36 72.2
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 1.2e-07 60.1 36 72.2
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.2e-07 60.1 44 59.1
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 1.6e-07 59.7 36 69.4
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 1.6e-07 59.7 36 69.4
CAN.G999.39 Capsicum annuum HOM05D002660 ORTHO05D003902 1.6e-07 59.7 36 69.4
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 1.6e-07 59.7 37 64.9
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 1.6e-07 59.7 37 67.6
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 2.1e-07 59.3 37 64.9
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 2.1e-07 59.3 37 64.9
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 4.7e-07 58.2 37 64.9
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 4.7e-07 58.2 36 61.1
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 4.7e-07 58.2 36 61.1
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 4.7e-07 58.2 39 66.7
Hma1.2p1_1430F.1_g282940 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 4.7e-07 58.2 54 50.0
MBI14_g44090_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 4.7e-07 58.2 40 62.5
Nitab4.5_0010333g0110 Nicotiana tabacum HOM05D011968 ORTHO05D014241 4.7e-07 58.2 53 49.1
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 4.7e-07 58.2 49 53.1
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 4.7e-07 58.2 50 54.0
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 4.7e-07 58.2 41 63.4
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 4.7e-07 58.2 41 63.4
Nitab4.5_0002093g0160 Nicotiana tabacum HOM05D011968 ORTHO05D014241 6.1e-07 57.8 34 67.6
Nitab4.5_0001023g0120 Nicotiana tabacum HOM05D002660 ORTHO05D003902 8.0e-07 57.4 43 51.2
Oeu022571.1 Olea europaea HOM05D001387 ORTHO05D001250 1.0e-06 57.0 63 41.3
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 1.0e-06 57.0 40 57.5
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 2.3e-06 55.8 38 50.0
Hma1.2p1_1529F.1_g289140 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 2.3e-06 55.8 54 48.1
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-06 55.8 37 59.5
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-06 55.8 37 59.5
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-06 55.8 37 59.5
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-06 55.8 37 59.5
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-06 55.8 37 59.5
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-06 55.8 37 59.5
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 2.3e-06 55.8 37 59.5
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 2.3e-06 55.8 37 59.5
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 2.3e-06 55.8 37 59.5
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 3.0e-06 55.5 36 61.1
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 3.0e-06 55.5 39 53.8
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 4.0e-06 55.1 36 55.6
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 4.0e-06 55.1 36 58.3
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 4.0e-06 55.1 41 58.5
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 4.0e-06 55.1 41 58.5
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 5.2e-06 54.7 39 64.1
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 6.7e-06 54.3 38 65.8
Nitab4.5_0003758g0080 Nicotiana tabacum HOM05D002660 ORTHO05D003902 6.7e-06 54.3 60 40.0
arahy.Tifrunner.gnm1.ann1.PK4DTL Arachis hypogaea HOM05D012916 ORTHO05D014365 8.8e-06 53.9 41 56.1
Nitab4.5_0013560g0040 Nicotiana tabacum HOM05D011968 ORTHO05D014241 8.8e-06 53.9 45 53.3
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 8.8e-06 53.9 39 59.0


User provided reference genes

Program Settings