Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G07741 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 2.4e-207 725.3 386 100.0
ATMG00410 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 2.4e-207 725.3 386 100.0
CARHR282790 Cardamine hirsuta HOM05D006604 ORTHO05D007974 1.6e-198 696.0 404 92.1
Sp3g25850 Schrenkiella parvula HOM05D006604 ORTHO05D007974 1.4e-154 550.1 375 80.0
BcaB06g27871 Brassica carinata HOM05D006604 ORTHO05D007974 5.0e-136 488.4 262 96.6
BolSC28t60364H Brassica oleracea HOM05D006604 ORTHO05D007974 5.0e-136 488.4 262 96.6
BraSC177t45762Z Brassica rapa HOM05D006604 ORTHO05D007974 5.0e-136 488.4 262 96.6
BraSC48t46229Z Brassica rapa HOM05D006604 ORTHO05D007974 5.0e-136 488.4 262 96.6
BraSC48t46317Z Brassica rapa HOM05D006604 ORTHO05D007974 5.0e-136 488.4 262 96.6
ATMG01170 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 1.1e-135 487.3 253 100.0
CARHR283400 Cardamine hirsuta HOM05D006604 ORTHO05D007974 1.1e-135 487.3 253 100.0
BraSC54t46362Z Brassica rapa HOM05D006604 ORTHO05D007974 3.6e-134 482.3 263 95.8
Sed0019535 Sechium edule HOM05D006604 ORTHO05D007974 8.0e-134 481.1 338 76.3
HanXRQMTg0579671 Helianthus annuus HOM05D006604 ORTHO05D007974 5.2e-125 451.8 255 92.5
HanXRQChr11g0320231 Helianthus annuus HOM05D006604 ORTHO05D007974 9.8e-124 447.6 255 91.8
DCAR_032438 Daucus carota HOM05D006604 ORTHO05D007974 5.4e-122 441.8 383 66.6
Lalb_Chr00c29g0408041 Lupinus albus HOM05D006604 ORTHO05D007974 3.5e-121 439.1 252 90.9
CANSAT16G0041 Cannabis sativa HOM05D006604 ORTHO05D007974 8.0e-118 427.9 240 92.9
CAN.G659.3 Capsicum annuum HOM05D006604 ORTHO05D007974 2.2e-115 419.9 258 85.7
Lalb_Chr01g0011021 Lupinus albus HOM05D006604 ORTHO05D007974 3.0e-112 409.5 239 89.5
SHI53023 Sapria himalayana HOM05D006604 ORTHO05D007974 3.3e-111 406.0 252 85.3
Aqoxy12s025 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 2.2e-107 393.3 269 79.6
FAN20G1951 Fragaria x ananassa HOM05D006604 ORTHO05D007974 3.7e-107 392.5 252 82.1
Aqoxy1G02966 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 2.4e-106 389.8 269 79.2
PGR028G0012 Punica granatum HOM05D006604 ORTHO05D007974 7.8e-105 384.8 239 85.8
HanXRQChr13g0388581 Helianthus annuus HOM05D006604 ORTHO05D007974 1.3e-104 384.0 255 81.2
RcHm_v2.0_MTg0498771 Rosa chinensis HOM05D006604 ORTHO05D007974 7.3e-103 378.3 239 84.5
arahy.Tifrunner.gnm1.ann1.QPI8J1 Arachis hypogaea HOM05D006604 ORTHO05D007974 2.1e-102 376.7 269 75.5
Nn1g10085 Nelumbo nucifera HOM05D006604 ORTHO05D007974 2.6e-100 369.8 239 83.7
SalBow1G2924 Salvia bowleyana HOM05D006604 ORTHO05D007974 3.1e-93 346.3 253 74.7
Gorai.001G160500 Gossypium raimondii HOM05D006604 ORTHO05D007974 2.6e-92 343.2 252 75.4
SEGI_09870 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 2.9e-91 339.7 252 75.8
SEGI_38071 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 8.4e-91 338.2 251 75.7
Nn044s41811 Nelumbo nucifera HOM05D006604 ORTHO05D007974 1.1e-90 337.8 215 84.2
SEGI_16408 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 7.1e-90 335.1 252 74.6
Aa31csc464G30 Aethionema arabicum HOM05D006604 ORTHO05D007974 2.3e-88 330.1 236 75.0
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 3.6e-86 322.8 252 72.2
Lsat_1_v5_gn_5_16121 Lactuca sativa HOM05D006604 ORTHO05D007974 6.2e-86 322.0 238 76.1
BolSC28t60307H Brassica oleracea HOM05D006604 ORTHO05D007974 3.4e-84 316.2 168 99.4
SEGI_30085 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 1.7e-80 303.9 223 77.1
LjContig00446g0008739 Lotus japonicus HOM05D006604 ORTHO05D007974 5.1e-80 302.4 224 74.1
SHI50293 Sapria himalayana HOM05D006604 ORTHO05D007974 3.3e-79 299.7 193 82.9
SHI41364 Sapria himalayana HOM05D006604 ORTHO05D007974 9.6e-79 298.1 223 74.4
SHI42031 Sapria himalayana HOM05D006604 ORTHO05D007974 9.6e-79 298.1 223 74.4
SHI54324 Sapria himalayana HOM05D006604 ORTHO05D007974 1.6e-78 297.4 223 74.4
Nitab4.5_0006806g0110 Nicotiana tabacum HOM05D006604 ORTHO05D007974 3.8e-75 286.2 258 64.3
SGA_v2.0_scaffold245G44658 Striga asiatica HOM05D006604 ORTHO05D007974 1.4e-74 284.3 252 65.5
CsaV3_UNG209110 Cucumis sativus L. HOM05D006604 ORTHO05D007974 4.6e-65 252.7 223 66.4
RcHm_v2.0_Chr6g0256721 Rosa chinensis HOM05D006604 ORTHO05D007974 1.0e-64 251.5 169 82.2
LjContig00439g0024190 Lotus japonicus HOM05D006604 ORTHO05D007974 1.2e-60 238.0 147 87.8
CARHR288260 Cardamine hirsuta HOM05D006604 ORTHO05D007974 1.1e-58 231.5 180 67.8
arahy.Tifrunner.gnm1.ann1.I4ZC3D Arachis hypogaea HOM05D006604 ORTHO05D007974 1.3e-51 208.0 151 71.5
unitig_87.g28014 Utricularia gibba HOM05D006604 ORTHO05D007974 3.8e-51 206.5 185 60.5
DCAR_031658 Daucus carota HOM05D006604 ORTHO05D007974 1.2e-49 201.4 235 52.8
BolC1t03444H Brassica oleracea HOM05D006604 ORTHO05D007974 1.9e-47 194.1 110 87.3
Nitab4.5_0002418g0200 Nicotiana tabacum HOM05D006604 ORTHO05D007974 9.7e-47 191.8 176 61.4
SMO053G0007 Selaginella moellendorffii HOM05D006604 ORTHO05D007974 8.2e-46 188.7 253 50.6
SHI36697 Sapria himalayana HOM05D006604 ORTHO05D007974 2.0e-44 184.1 134 78.4
SHI50562 Sapria himalayana HOM05D006604 ORTHO05D007974 2.0e-44 184.1 134 78.4
SHI36367 Sapria himalayana HOM05D006604 ORTHO05D007974 1.0e-43 181.8 132 78.8
C01p34770 Brassica napus HOM05D013555 ORTHO05D016062 1.4e-42 177.9 114 77.2
C01p34870 Brassica napus HOM05D013555 ORTHO05D016062 1.4e-42 177.9 117 76.1
Nitab4.5_0002404g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 2.5e-42 177.2 139 67.6
Potri.014G168000 Populus trichocarpa HOM05D006604 ORTHO05D007974 9.4e-42 175.3 129 75.2
SHI37564 Sapria himalayana HOM05D006604 ORTHO05D007974 3.6e-41 173.3 134 76.1
EL10Ac2g04656 Beta vulgaris HOM05D001314 ORTHO05D001165 7.9e-41 172.2 101 86.1
SHI35295 Sapria himalayana HOM05D006604 ORTHO05D007974 1.0e-40 171.8 105 81.9
ClCG00G004290 Citrullus lanatus HOM05D006604 ORTHO05D007974 3.9e-40 169.9 166 60.8
SHI35759 Sapria himalayana HOM05D006604 ORTHO05D007974 1.5e-39 167.9 104 80.8
SHI53009 Sapria himalayana HOM05D006604 ORTHO05D007974 7.4e-39 165.6 128 75.8
Os12g0424180 Oryza sativa ssp. japonica HOM05D006604 ORTHO05D007974 4.8e-38 162.9 129 69.0
arahy.Tifrunner.gnm1.ann1.NC5V37 Arachis hypogaea HOM05D006604 ORTHO05D007974 1.8e-37 161.0 124 64.5
SHI35478 Sapria himalayana HOM05D006604 ORTHO05D007974 1.8e-37 161.0 104 79.8
CARHR288250 Cardamine hirsuta HOM05D006604 ORTHO05D007974 2.9e-35 153.7 91 92.3
Lj2P1232T107 Lonicera japonica HOM05D006604 ORTHO05D007974 2.1e-33 147.5 239 43.9
SHI28635 Sapria himalayana HOM05D006604 ORTHO05D007974 4.7e-33 146.4 147 63.3
GSVIVG01023423001 Vitis vinifera HOM05D006604 ORTHO05D007974 1.7e-30 137.9 90 77.8
ClCG06G009210 Citrullus lanatus HOM05D006604 ORTHO05D007974 4.5e-28 129.8 157 54.1
ATR0392G001 Amborella trichopoda HOM05D006604 ORTHO05D007974 5.9e-28 129.4 101 71.3
Peaxi162Scf00000g01811 Petunia axillaris HOM05D006604 ORTHO05D007974 1.0e-27 128.6 193 49.2
Mapoly1449s0001 Marchantia polymorpha HOM05D006604 ORTHO05D007974 2.2e-27 127.5 213 35.7
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 3.6e-25 120.2 126 60.3
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 3.6e-25 120.2 126 60.3
SHI33922 Sapria himalayana HOM05D006604 ORTHO05D007974 5.2e-24 116.3 151 51.0
MELO3C034885.2 Cucumis melo HOM05D006604 ORTHO05D007974 2.0e-23 114.4 141 50.4
SHI54304 Sapria himalayana HOM05D006604 ORTHO05D007974 5.7e-23 112.8 70 84.3
Nitab4.5_0005246g0050 Nicotiana tabacum HOM05D006604 ORTHO05D007974 9.7e-23 112.1 214 40.2
Glyma.16G133700 Glycine max HOM05D006604 ORTHO05D007974 1.7e-22 111.3 70 82.9
LjContig00439g0025482 Lotus japonicus HOM05D006604 ORTHO05D007974 2.2e-22 110.9 70 84.3
SHI51349 Sapria himalayana HOM05D006604 ORTHO05D007974 2.8e-22 110.5 88 68.2
Dinv06717 Davidia involucrata HOM05D004291 ORTHO05D015100 6.3e-22 109.4 153 43.1
MD15G1429600 Malus domestica HOM05D006604 ORTHO05D007974 1.1e-21 108.6 73 80.8
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 9.1e-21 105.5 153 43.1
Nn7g37740 Nelumbo nucifera HOM05D006604 ORTHO05D007974 9.1e-21 105.5 67 85.1
RcHm_v2.0_Chr7g0231141 Rosa chinensis HOM05D006604 ORTHO05D007974 1.2e-20 105.1 69 81.2
Glyma.01G103450 Glycine max HOM05D006604 ORTHO05D007974 2.0e-20 104.4 73 75.3
BolC1t03453H Brassica oleracea HOM05D013555 ORTHO05D007974 1.3e-19 101.7 116 50.9
Nn6g31985 Nelumbo nucifera HOM05D006604 ORTHO05D007974 1.3e-19 101.7 63 79.4
MELO3C027032.2 Cucumis melo HOM05D006604 ORTHO05D007974 2.2e-19 100.9 69 78.3
SHI01304 Sapria himalayana HOM05D006604 ORTHO05D007974 2.2e-19 100.9 87 66.7
GSVIVG01035307001 Vitis vinifera HOM05D000029 ORTHO05D001072 3.8e-19 100.1 103 60.2
SHI35935 Sapria himalayana HOM05D006604 ORTHO05D007974 1.2e-17 95.1 64 73.4
TPR.G6244 Trifolium pratense HOM05D008992 ORTHO05D007974 1.6e-17 94.7 58 77.6
MELO3C027524.2 Cucumis melo HOM05D006604 ORTHO05D007974 8.8e-16 89.0 62 75.8
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 1.5e-15 88.2 146 43.8
Nn2g15525 Nelumbo nucifera HOM05D006604 ORTHO05D007974 3.4e-15 87.0 57 84.2
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 4.4e-15 86.7 51 90.2
Cre01.g018800 Chlamydomonas reinhardtii HOM05D006604 ORTHO05D007974 1.7e-14 84.7 154 39.0
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 2.2e-14 84.3 258 29.1
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 2.2e-14 84.3 258 29.1
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 2.2e-14 84.3 258 29.1
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 2.2e-14 84.3 258 29.1
MELO3C029409.2 Cucumis melo HOM05D006604 ORTHO05D007974 2.8e-14 84.0 61 75.4
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 3.7e-14 83.6 107 43.9
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 1.1e-13 82.0 191 31.4
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 1.1e-13 82.0 191 31.4
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 1.1e-13 82.0 191 31.4
Medtr8g077470 Medicago truncatula HOM05D006604 ORTHO05D007974 7.7e-12 75.9 60 61.7
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 1.0e-11 75.5 258 28.3
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 1.0e-11 75.5 258 28.3
SHI27524 Sapria himalayana HOM05D006604 ORTHO05D007974 1.3e-11 75.1 65 60.0
Zm00001eb086120 Zea mays HOM05D025758 ORTHO05D015100 1.7e-11 74.7 193 32.6
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 2.3e-11 74.3 47 76.6
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 5.0e-11 73.2 194 30.4
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 5.0e-11 73.2 194 30.4
Nitab4.5_0002418g0090 Nicotiana tabacum HOM05D006604 ORTHO05D007974 5.0e-11 73.2 44 84.1
SHI01303 Sapria himalayana HOM05D006604 ORTHO05D007974 5.0e-11 73.2 56 67.9
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 6.6e-11 72.8 191 30.4
Zm00001eb181630 Zea mays HOM05D013913 ORTHO05D015100 8.6e-11 72.4 105 41.9
SHI37140 Sapria himalayana HOM05D006604 ORTHO05D007974 4.2e-10 70.1 45 77.8
Eucgr.D01303 Eucalyptus grandis HOM05D006604 ORTHO05D007974 7.2e-10 69.3 91 47.3
SHI55017 Sapria himalayana HOM05D006604 ORTHO05D007974 7.2e-10 69.3 45 84.4
SHI27523 Sapria himalayana HOM05D046180 ORTHO05D007974 1.2e-09 68.6 110 40.0
ECA039G0009 Erigeron canadensis HOM05D008105 ORTHO05D010309 2.8e-09 67.4 38 94.7
SHI12109 Sapria himalayana HOM05D006604 ORTHO05D007974 4.7e-09 66.6 44 70.5
SHI36463 Sapria himalayana HOM05D006604 ORTHO05D007974 4.7e-09 66.6 43 79.1
ECA003G0002 Erigeron canadensis HOM05D006604 ORTHO05D007974 2.3e-08 64.3 35 97.1
SHI31173 Sapria himalayana HOM05D006604 ORTHO05D007974 1.2e-07 62.0 168 33.9
MELO3C000965.2 Cucumis melo HOM05D006604 ORTHO05D007974 3.4e-07 60.5 47 68.1
Medtr0248s0030 Medicago truncatula HOM05D006604 ORTHO05D007974 4.9e-06 56.6 31 93.5


User provided reference genes

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