Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATMG00285 Arabidopsis thaliana HOM05D008466 ORTHO05D010817 5.8e-101 370.9 192 100.0
SEGI_14764 Sequoiadendron giganteum HOM05D008466 ORTHO05D010817 1.2e-74 283.5 182 83.0
BolSC28t60321H Brassica oleracea HOM05D008466 ORTHO05D010817 3.5e-66 255.4 194 74.7
BraSC48t46287Z Brassica rapa HOM05D008466 ORTHO05D010817 3.5e-66 255.4 194 74.7
BraSC48t46336Z Brassica rapa HOM05D008466 ORTHO05D010817 3.5e-66 255.4 194 74.7
Nitab4.5_0002325g0090 Nicotiana tabacum HOM05D008466 ORTHO05D010817 4.6e-66 255.0 239 63.2
A04p09550 Brassica napus HOM05D008466 ORTHO05D010817 1.8e-65 253.1 192 75.5
Nitab4.5_0014136g0010 Nicotiana tabacum HOM05D008466 ORTHO05D010817 6.3e-63 244.6 309 51.5
LjContig00315g0013151 Lotus japonicus HOM05D008466 ORTHO05D010817 7.6e-61 237.7 133 94.0
Potri.007G062442 Populus trichocarpa HOM05D008466 ORTHO05D010817 1.0e-60 237.3 139 90.6
Lalb_Chr00c21g0406001 Lupinus albus HOM05D008466 ORTHO05D010817 1.1e-59 233.8 139 89.9
Nitab4.5_0010033g0120 Nicotiana tabacum HOM05D008466 ORTHO05D010817 2.7e-58 229.2 133 89.5
Nitab4.5_0000172g1700 Nicotiana tabacum HOM05D008466 ORTHO05D010817 7.4e-56 221.1 232 59.1
Nitab4.5_0000031g0180 Nicotiana tabacum HOM05D008466 ORTHO05D011423 9.7e-56 220.7 279 50.9
Glyma.01G136900 Glycine max HOM05D008466 ORTHO05D010817 1.1e-54 217.2 139 82.7
BolSC28t60423H Brassica oleracea HOM05D008466 ORTHO05D010817 3.4e-53 212.2 173 69.9
CDE02G0407 Ceratophyllum demersum HOM05D008466 ORTHO05D010817 8.5e-52 207.6 126 88.1
Nitab4.5_0008578g0050 Nicotiana tabacum HOM05D008466 ORTHO05D011423 2.6e-48 196.1 205 57.1
Gorai.001G167700 Gossypium raimondii HOM05D008466 ORTHO05D010817 7.4e-48 194.5 168 64.9
Peaxi162Scf00651g00634 Petunia axillaris HOM05D008466 ORTHO05D010817 9.1e-46 187.6 177 67.2
TPR.G7441 Trifolium pratense HOM05D008466 ORTHO05D010817 8.0e-42 174.5 95 94.7
Nitab4.5_0001796g0330 Nicotiana tabacum HOM05D008466 ORTHO05D010817 2.2e-39 166.4 100 86.0
VMungo0565G0006 Vigna mungo HOM05D008466 ORTHO05D010817 2.9e-36 156.0 83 95.2
Lalb_Chr00c39g0409011 Lupinus albus HOM05D008466 ORTHO05D010817 9.4e-35 151.0 83 92.8
Lalb_Chr00c39g0409191 Lupinus albus HOM05D008466 ORTHO05D010817 9.4e-35 151.0 83 92.8
Lalb_Chr18g0049571 Lupinus albus HOM05D008466 ORTHO05D010817 9.4e-35 151.0 83 92.8
SalBow1G0863 Salvia bowleyana HOM05D008466 ORTHO05D010817 2.1e-34 149.8 80 95.0
CiPaw.11G081100 Carya illinoinensis HOM05D008466 ORTHO05D010817 4.7e-34 148.7 83 91.6
Nitab4.5_0000580g0160 Nicotiana tabacum HOM05D008466 ORTHO05D010817 8.0e-34 147.9 91 84.6
Zm00001eb187490 Zea mays HOM05D008466 ORTHO05D010817 4.0e-33 145.6 83 90.4
Zm00001eb436220 Zea mays HOM05D008466 ORTHO05D010817 4.0e-33 145.6 83 90.4
Zm00001eb436270 Zea mays HOM05D008466 ORTHO05D010817 4.0e-33 145.6 83 90.4
Zm00001eb436350 Zea mays HOM05D008466 ORTHO05D010817 4.0e-33 145.6 83 90.4
Zm00001eb436460 Zea mays HOM05D008466 ORTHO05D010817 4.0e-33 145.6 83 90.4
Zm00001eb436500 Zea mays HOM05D008466 ORTHO05D010817 4.0e-33 145.6 83 90.4
Medtr2g040780 Medicago truncatula HOM05D008466 ORTHO05D010817 6.3e-31 138.3 73 94.5
arahy.Tifrunner.gnm1.ann1.48KRUQ Arachis hypogaea HOM05D008466 ORTHO05D010817 5.3e-30 135.2 73 93.2
Nitab4.5_0001952g0260 Nicotiana tabacum HOM05D008466 ORTHO05D010817 2.2e-28 129.8 192 47.9
Medtr8g059750 Medicago truncatula HOM05D008466 ORTHO05D010817 6.1e-26 121.7 87 77.0
Mapoly0157s0028 Marchantia polymorpha HOM05D008466 ORTHO05D010817 8.8e-25 117.9 83 78.3
Hma1.2p1_0335F.1_g128880 Hydrangea macrophylla HOM05D008923 ORTHO05D011423 1.5e-24 117.1 62 95.2
Ca_04597_v3 Cicer arietinum L. HOM05D008923 ORTHO05D013768 1.8e-22 110.2 63 90.5
Gohir.D02G091950 Gossypium hirsutum HOM05D008923 ORTHO05D011423 1.6e-21 107.1 62 87.1
Gohir.D08G087750 Gossypium hirsutum HOM05D008923 ORTHO05D011423 1.6e-21 107.1 62 90.3
GSVIVG01004963001 Vitis vinifera HOM05D008923 ORTHO05D011423 2.0e-21 106.7 62 88.7
RcHm_v2.0_MTg0498181 Rosa chinensis HOM05D008466 ORTHO05D010817 5.9e-21 105.1 57 96.5
Gorai.005G103300 Gossypium raimondii HOM05D008923 ORTHO05D011423 1.3e-20 104.0 62 87.1
BraSC48t46301Z Brassica rapa HOM05D008466 ORTHO05D010817 3.8e-20 102.4 52 94.2
arahy.Tifrunner.gnm1.ann1.GWEJ34 Arachis hypogaea HOM05D008466 ORTHO05D010817 6.6e-20 101.7 57 93.0
SalBow1G1510 Salvia bowleyana HOM05D008923 ORTHO05D011423 8.6e-20 101.3 52 96.2
Psat0s2778g0120 Pisum sativum HOM05D008923 ORTHO05D011423 1.5e-19 100.5 51 98.0
Carub.0006s2655 Capsella rubella HOM05D008466 ORTHO05D010817 2.5e-19 99.8 95 62.1
FvH4_c1g00520 Fragaria vesca HOM05D008923 ORTHO05D011423 4.2e-19 99.0 71 77.5
Nitab4.5_0000925g0080 Nicotiana tabacum HOM05D008923 ORTHO05D011423 7.2e-19 98.2 62 83.9
RhsimMtG0002900 Rhododendron simsii HOM05D008923 ORTHO05D011423 7.2e-19 98.2 51 96.1
Sopen00g002560 Solanum pennellii HOM05D008923 ORTHO05D011423 7.2e-19 98.2 51 96.1
VMungo0565G0002 Vigna mungo HOM05D008923 ORTHO05D011423 7.2e-19 98.2 51 96.1
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 2.1e-18 96.7 190 38.9
HanXRQMTg0579461 Helianthus annuus HOM05D008923 ORTHO05D011423 3.6e-18 95.9 51 92.2
Nitab4.5_0001796g0310 Nicotiana tabacum HOM05D008923 ORTHO05D011423 6.1e-18 95.1 52 90.4
ATR0480G001 Amborella trichopoda HOM05D008923 ORTHO05D011423 8.0e-18 94.7 96 60.4
SHI54298 Sapria himalayana HOM05D008923 ORTHO05D011423 4.0e-17 92.4 61 80.3
FAN20G1591 Fragaria x ananassa HOM05D008923 ORTHO05D011423 1.4e-14 84.0 64 73.4
SHI26553 Sapria himalayana HOM05D008923 ORTHO05D011423 5.9e-13 78.6 64 71.9
MBI08_g16748_MAGBIO Magnolia biondii HOM05D008923 ORTHO05D011423 1.3e-12 77.4 52 80.8
Gohir.D08G147600 Gossypium hirsutum HOM05D000729 ORTHO05D001063 6.8e-09 65.1 173 28.3
Potri.011G075051 Populus trichocarpa HOM05D000729 ORTHO05D001063 2.6e-08 63.2 176 27.8
arahy.Tifrunner.gnm1.ann1.KE24QQ Arachis hypogaea HOM05D000729 ORTHO05D001063 3.4e-08 62.8 105 32.4
Migut.F01470 Erythranthe guttata HOM05D000729 ORTHO05D001063 3.4e-08 62.8 192 28.6
HanXRQChr09g0249681 Helianthus annuus HOM05D000729 ORTHO05D001063 4.4e-08 62.4 189 29.6
Medtr3g035660 Medicago truncatula HOM05D000729 ORTHO05D001063 7.5e-08 61.6 195 29.2
EL10As15g24113 Beta vulgaris HOM05D000729 ORTHO05D001063 9.8e-08 61.2 174 28.2
HanXRQChr12g0369921 Helianthus annuus HOM05D000729 ORTHO05D001063 9.8e-08 61.2 189 29.6
RcHm_v2.0_Chr2g0118391 Rosa chinensis HOM05D000729 ORTHO05D001063 9.8e-08 61.2 158 30.4
arahy.Tifrunner.gnm1.ann1.6Q4XIG Arachis hypogaea HOM05D000729 ORTHO05D001063 1.3e-07 60.8 195 28.7
LjContig00319g0001918 Lotus japonicus HOM05D000729 ORTHO05D001063 1.7e-07 60.5 195 28.2
Potri.013G139112 Populus trichocarpa HOM05D000729 ORTHO05D001063 1.7e-07 60.5 189 28.6
Sed0008128 Sechium edule HOM05D000729 ORTHO05D001063 1.7e-07 60.5 189 28.6
Hund03965 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-07 60.5 170 28.2
Hund10279 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-07 60.5 105 31.4
Hund31224 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.7e-07 60.5 105 31.4
EL10Ac5g11886 Beta vulgaris HOM05D000729 ORTHO05D001063 2.2e-07 60.1 166 28.3
Gohir.A09G093100 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.2e-07 60.1 173 28.9
HanXRQChr00c0264g0572891 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 29.1
HanXRQChr00c0434g0574661 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 29.1
HanXRQChr00c0554g0575661 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 105 34.3
HanXRQChr01g0020151 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 29.1
HanXRQChr02g0059631 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 29.1
HanXRQChr05g0152351 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 29.1
HanXRQChr05g0152491 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 29.1
HanXRQChr07g0194901 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 29.1
HanXRQChr10g0284481 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 29.1
HanXRQChr11g0321181 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 29.1
HanXRQChr11g0327111 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 29.1
HanXRQChr11g0333791 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 29.1
HanXRQChr17g0569661 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 29.1
HanXRQCPg0580271 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 29.1
HanXRQCPg0580451 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 29.1
Hund07988 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 28.0
Hund08790 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 28.0
Hund22780 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 28.0
Hund27635 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 28.0
Hund27858 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 28.0
Hund27885 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 28.0
Hund27921 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 173 27.7
Hund27951 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 28.0
Hund28172 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 28.0
Hund28540 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 28.0
Hund28970 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 28.0
Hund29048 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 28.0
Hund29105 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 28.0
Hund29118 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 28.0
Hund29149 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 28.0
Hund29155 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.2e-07 60.1 189 28.0
DCAR_032530 Daucus carota HOM05D000729 ORTHO05D001063 2.9e-07 59.7 189 28.6
DCAR_032546 Daucus carota HOM05D000729 ORTHO05D001063 2.9e-07 59.7 189 28.6
Gohir.D01G101826 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.9e-07 59.7 189 28.0
HanXRQChr10g0317951 Helianthus annuus HOM05D000729 ORTHO05D001063 2.9e-07 59.7 173 28.9
Hma1.2p1_0052F.1_g030753 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.9e-07 59.7 189 28.6
Hma1.2p1_0052F.1_g030756 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.9e-07 59.7 173 28.3
Hma1.2p1_1244F.1_g270050 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.9e-07 59.7 173 28.3
Hma1.2p1_1244F.1_g270060 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.9e-07 59.7 189 28.6
Psat5g286120 Pisum sativum HOM05D000729 ORTHO05D001063 2.9e-07 59.7 105 33.3
SalBow1G3941 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.9e-07 59.7 173 28.3
SalBow1G4562 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.9e-07 59.7 173 28.3
SalBow1G6647 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.9e-07 59.7 173 28.3
SMO310G0006 Selaginella moellendorffii HOM05D006493 ORTHO05D009864 2.9e-07 59.7 126 38.1
Os04g0473025 Oryza sativa ssp. japonica HOM05D000729 ORTHO05D001063 3.7e-07 59.3 149 30.2
PSO548G0058 Papaver somniferum HOM05D000729 ORTHO05D001063 3.7e-07 59.3 189 28.0
PSO548G0065 Papaver somniferum HOM05D000729 ORTHO05D001063 3.7e-07 59.3 189 28.0
Phvul.002G090555 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 3.7e-07 59.3 110 32.7
PGR111G0104 Punica granatum HOM05D000729 ORTHO05D001063 3.7e-07 59.3 192 29.2
PGR111G0125 Punica granatum HOM05D000729 ORTHO05D001063 3.7e-07 59.3 192 29.2
RcHm_v2.0_Chr5g0051091 Rosa chinensis HOM05D000729 ORTHO05D001063 3.7e-07 59.3 192 29.2
RcHm_v2.0_CPg0501741 Rosa chinensis HOM05D000729 ORTHO05D001063 3.7e-07 59.3 192 29.2
RcHm_v2.0_CPg0502671 Rosa chinensis HOM05D000729 ORTHO05D001063 3.7e-07 59.3 192 29.2
BolC7t41702H Brassica oleracea HOM05D000729 ORTHO05D001063 4.9e-07 58.9 105 32.4
BolSC47t61056H Brassica oleracea HOM05D000729 ORTHO05D001063 4.9e-07 58.9 105 32.4
BolSC49t61130H Brassica oleracea HOM05D000729 ORTHO05D001063 4.9e-07 58.9 105 32.4
BraSC59t46561Z Brassica rapa HOM05D000729 ORTHO05D001063 4.9e-07 58.9 105 32.4
HanXRQChr00c0386g0574421 Helianthus annuus HOM05D000729 ORTHO05D001063 4.9e-07 58.9 160 29.4
Nitab4.5_0000174g0030 Nicotiana tabacum HOM05D000729 ORTHO05D001063 4.9e-07 58.9 105 31.4
Aqoxy4G02024 Aquilegia oxysepala HOM05D000729 ORTHO05D001063 6.4e-07 58.5 105 31.4
C06p23140 Brassica napus HOM05D000729 ORTHO05D001063 6.4e-07 58.5 195 29.2
BolC2t10586H Brassica oleracea HOM05D000729 ORTHO05D001063 6.4e-07 58.5 195 29.2
BolSC29t60627H Brassica oleracea HOM05D000729 ORTHO05D001063 6.4e-07 58.5 195 29.2
BolSC35t60718H Brassica oleracea HOM05D000729 ORTHO05D001063 6.4e-07 58.5 195 29.2
BolSC49t61156H Brassica oleracea HOM05D000729 ORTHO05D001063 6.4e-07 58.5 195 29.2
BolSC49t61215H Brassica oleracea HOM05D000729 ORTHO05D001063 6.4e-07 58.5 195 29.2
BraSC103t45493Z Brassica rapa HOM05D000729 ORTHO05D001063 6.4e-07 58.5 195 29.2
BraSC138t45543Z Brassica rapa HOM05D000729 ORTHO05D001063 6.4e-07 58.5 195 29.2
BraSC58t46449Z Brassica rapa HOM05D000729 ORTHO05D001063 6.4e-07 58.5 195 29.2
CiPaw.03G002000 Carya illinoinensis HOM05D000729 ORTHO05D001063 6.4e-07 58.5 198 27.8
Gohir.A05G306433 Gossypium hirsutum HOM05D000729 ORTHO05D001063 6.4e-07 58.5 189 27.0
Nitab4.5_0012234g0040 Nicotiana tabacum HOM05D000729 ORTHO05D001063 6.4e-07 58.5 165 29.1
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 8.3e-07 58.2 189 28.0
Eucgr.I01854 Eucalyptus grandis HOM05D000729 ORTHO05D001063 1.1e-06 57.8 192 28.6
Gohir.A05G307266 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.1e-06 57.8 175 28.6
HanXRQChr13g0416581 Helianthus annuus HOM05D000729 ORTHO05D001063 1.1e-06 57.8 160 28.8
Nn029s41588 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.1e-06 57.8 189 27.5
Nn031s41603 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.1e-06 57.8 189 27.5
Nn206s45069 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.1e-06 57.8 189 27.5
Nn219s45284 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.1e-06 57.8 189 27.5
Nn233s45561 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.1e-06 57.8 189 27.5
Nn269s46005 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.1e-06 57.8 189 27.5
TAR022G0002 Trochodendron aralioides HOM05D003666 ORTHO05D004770 1.1e-06 57.8 68 42.6
arahy.Tifrunner.gnm1.ann1.984MHU Arachis hypogaea HOM05D000729 ORTHO05D001063 1.4e-06 57.4 195 30.3
Thhalv10011731m.g Eutrema salsugineum HOM05D000729 ORTHO05D001063 1.4e-06 57.4 195 29.2
HanXRQChr13g0399651 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-06 57.4 160 28.8
EL10As12g24040 Beta vulgaris HOM05D000729 ORTHO05D001063 1.9e-06 57.0 106 29.2
Lalb_Chr07g0191631 Lupinus albus HOM05D000729 ORTHO05D001063 1.9e-06 57.0 179 27.4
Phvul.003G089802 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 1.9e-06 57.0 179 28.5
Phvul.009G090272 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 1.9e-06 57.0 179 28.5
BolSC45t60896H Brassica oleracea HOM05D000729 ORTHO05D001063 2.4e-06 56.6 145 29.7
Gohir.A05G089950 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.4e-06 56.6 105 31.4
Gohir.A09G045500 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.4e-06 56.6 189 28.0
C06p21330 Brassica napus HOM05D000729 ORTHO05D001063 3.2e-06 56.2 180 29.4
BolSC37t60784H Brassica oleracea HOM05D000729 ORTHO05D001063 5.4e-06 55.5 191 28.8
Gohir.A08G078001 Gossypium hirsutum HOM05D000729 ORTHO05D001063 7.0e-06 55.1 155 28.4
HanXRQChr08g0227771 Helianthus annuus HOM05D000729 ORTHO05D001063 7.0e-06 55.1 105 31.4
Medtr1g088510 Medicago truncatula HOM05D000729 ORTHO05D001063 7.0e-06 55.1 68 42.6


User provided reference genes

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