Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 6.1e-111 404.1 191 100.0
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 5.2e-110 401.0 191 99.5
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 1.2e-109 399.8 191 99.0
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 1.2e-109 399.8 191 99.0
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 1.2e-109 399.8 191 99.0
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 3.4e-109 398.3 191 98.4
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 5.7e-109 397.5 191 97.9
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 7.5e-109 397.1 191 97.9
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 8.3e-108 393.7 191 97.4
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 5.4e-107 391.0 191 96.3
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 9.2e-107 390.2 191 96.9
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 9.2e-107 390.2 191 96.9
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 1.2e-106 389.8 191 96.9
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 2.0e-106 389.0 191 96.3
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 7.8e-106 387.1 191 95.8
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 7.8e-106 387.1 191 96.3
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 7.8e-106 387.1 191 96.3
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 7.8e-106 387.1 191 96.3
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 1.7e-105 386.0 191 96.3
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 1.7e-105 386.0 191 96.3
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 6.6e-105 384.0 191 95.8
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 6.6e-105 384.0 191 95.8
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 8.6e-105 383.6 191 94.8
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 1.1e-104 383.3 189 96.3
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 1.1e-104 383.3 191 95.3
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 6.2e-103 377.5 188 94.1
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 2.3e-102 375.6 191 94.2
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 3.1e-102 375.2 184 96.2
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 4.0e-102 374.8 188 93.1
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 7.5e-101 370.5 191 92.7
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 1.3e-100 369.8 191 93.2
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 8.3e-100 367.1 188 92.6
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 1.6e-98 362.8 188 89.9
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 6.0e-98 360.9 191 90.6
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.0e-97 358.6 179 94.4
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 1.5e-96 356.3 170 99.4
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 1.6e-95 352.8 189 90.5
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 8.1e-95 350.5 170 98.2
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 2.3e-94 349.0 186 88.7
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 2.3e-94 349.0 186 88.7
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 5.2e-94 347.8 170 97.1
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 5.2e-94 347.8 170 97.1
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 1.2e-93 346.7 167 98.2
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 4.4e-93 344.7 170 97.1
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 7.5e-93 344.0 170 95.9
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 9.8e-93 343.6 170 95.9
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.9e-92 342.0 170 96.5
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.9e-92 342.0 170 96.5
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 7.1e-91 337.4 170 95.3
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 1.2e-90 336.7 168 95.8
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 1.6e-90 336.3 166 96.4
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 7.8e-90 334.0 168 95.2
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 1.3e-89 333.2 170 94.1
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-89 332.4 170 92.9
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 8.6e-89 330.5 185 85.4
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 8.6e-89 330.5 177 89.8
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 1.5e-88 329.7 165 95.2
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-86 323.6 163 93.9
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 1.4e-86 323.2 170 91.8
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 5.2e-86 321.2 160 94.4
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 6.8e-86 320.9 166 92.2
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-85 319.7 168 89.9
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 1.9e-83 312.8 191 81.7
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 2.4e-83 312.4 179 84.4
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 1.2e-82 310.1 180 82.8
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-82 310.1 165 89.1
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-82 309.3 177 83.6
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 3.5e-82 308.5 164 89.0
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 2.8e-79 298.9 169 86.4
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 3.6e-79 298.5 164 87.8
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 5.2e-78 294.7 188 74.5
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 8.9e-78 293.9 170 84.1
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 2.9e-76 288.9 153 91.5
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 6.4e-76 287.7 141 97.2
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 6.4e-76 287.7 141 97.2
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 1.4e-75 286.6 167 85.0
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-72 276.2 138 95.7
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 5.6e-72 274.6 135 96.3
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 2.4e-70 269.2 135 94.1
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-69 266.5 155 83.9
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-68 263.5 142 88.0
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-68 262.7 138 91.3
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-68 262.7 138 91.3
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 3.2e-67 258.8 132 92.4
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 9.3e-67 257.3 131 92.4
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-65 253.8 148 83.1
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 3.9e-65 251.9 172 77.3
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 3.1e-62 242.3 136 86.8
BolC1t03442H Brassica oleracea HOM05D001560 ORTHO05D004675 4.0e-62 241.9 192 67.2
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 5.3e-62 241.5 130 90.0
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 4.5e-61 238.4 136 86.0
C01p34750 Brassica napus HOM05D001560 ORTHO05D004675 1.3e-60 236.9 192 66.7
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-58 229.9 138 84.1
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-57 227.3 135 83.7
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-57 226.1 127 85.8
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 3.3e-56 222.2 114 92.1
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.8e-54 216.5 148 74.3
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 2.4e-54 216.1 185 63.2
Sopen00g002540 Solanum pennellii HOM05D001560 ORTHO05D004675 6.9e-54 214.5 114 90.4
CARHR287160 Cardamine hirsuta HOM05D001560 ORTHO05D004675 3.4e-53 212.2 99 99.0
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 7.6e-53 211.1 109 91.7
arahy.Tifrunner.gnm1.ann1.11DKXG Arachis hypogaea HOM05D001560 ORTHO05D004675 2.2e-52 209.5 100 97.0
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 2.5e-51 206.1 133 78.9
arahy.Tifrunner.gnm1.ann1.E4X7TI Arachis hypogaea HOM05D001560 ORTHO05D004675 9.3e-51 204.1 97 96.9
Ca_22175_v3 Cicer arietinum L. HOM05D001560 ORTHO05D004675 1.6e-50 203.4 96 97.9
Dinv29327 Davidia involucrata HOM05D001560 ORTHO05D004675 1.6e-50 203.4 99 96.0
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.3e-49 199.5 101 93.1
CDE02G2746 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 3.9e-49 198.7 138 73.2
SHI42241 Sapria himalayana HOM05D001560 ORTHO05D004675 3.9e-49 198.7 115 85.2
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 3.3e-48 195.7 153 59.5
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 1.4e-46 190.3 181 50.3
SHI45393 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-46 189.9 100 89.0
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 6.9e-46 188.0 96 91.7
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.2e-44 183.0 102 86.3
PGSC0003DMG400018984 Solanum tuberosum HOM05D001560 ORTHO05D004675 2.2e-44 183.0 99 86.9
SHI26652 Sapria himalayana HOM05D001560 ORTHO05D004675 8.5e-44 181.0 94 89.4
Solyc01g020470.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.9e-43 179.9 143 65.0
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 2.1e-42 176.4 108 80.6
TPR.G40193 Trifolium pratense HOM05D001560 ORTHO05D004675 5.1e-41 171.8 79 97.5
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 2.8e-39 166.0 89 88.8
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 4.8e-39 165.2 164 56.7
SHI36139 Sapria himalayana HOM05D001560 ORTHO05D004675 4.1e-38 162.2 132 63.6
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 5.3e-38 161.8 172 52.3
SHI36775 Sapria himalayana HOM05D001560 ORTHO05D004675 9.1e-38 161.0 87 85.1
SHI36786 Sapria himalayana HOM05D001560 ORTHO05D004675 9.1e-38 161.0 87 85.1
CAN.G134.23 Capsicum annuum HOM05D001560 ORTHO05D004675 1.1e-35 154.1 74 95.9
Gohir.A03G134200 Gossypium hirsutum HOM05D001560 ORTHO05D004675 1.1e-35 154.1 74 95.9
Solyc08g029250.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 4.2e-35 152.1 150 56.7
Manes.01G049495 Manihot esculenta HOM05D001560 ORTHO05D004675 7.2e-35 151.4 74 91.9
Zm00001eb436070 Zea mays HOM05D001560 ORTHO05D004675 7.2e-35 151.4 74 94.6
Zm00001eb440310 Zea mays HOM05D001560 ORTHO05D004675 7.2e-35 151.4 74 94.6
Zm00001eb440380 Zea mays HOM05D001560 ORTHO05D004675 7.2e-35 151.4 74 94.6
Zm00001eb442180 Zea mays HOM05D001560 ORTHO05D004675 7.2e-35 151.4 74 94.6
SHI39097 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-34 149.8 81 85.2
AUR62042344 Chenopodium quinoa HOM05D001560 ORTHO05D004675 3.0e-33 146.0 71 93.0
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 3.0e-33 146.0 86 80.2
Manes.01G049510 Manihot esculenta HOM05D001560 ORTHO05D004675 8.8e-33 144.4 68 95.6
SHI36081 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-32 144.1 74 89.2
SMO053G0006 Selaginella moellendorffii HOM05D001560 ORTHO05D004675 2.0e-32 143.3 175 44.0
SHI36375 Sapria himalayana HOM05D001560 ORTHO05D004675 2.6e-32 142.9 74 89.2
Nitab4.5_0013170g0020 Nicotiana tabacum HOM05D001560 ORTHO05D004675 5.7e-32 141.7 72 90.3
SHI38033 Sapria himalayana HOM05D001560 ORTHO05D004675 5.7e-32 141.7 74 89.2
SHI40902 Sapria himalayana HOM05D001560 ORTHO05D004675 7.4e-32 141.4 74 87.8
SHI39123 Sapria himalayana HOM05D001560 ORTHO05D004675 9.7e-32 141.0 74 87.8
SHI36939 Sapria himalayana HOM05D001560 ORTHO05D004675 4.8e-31 138.7 72 88.9
SHI36627 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-30 137.5 70 90.0
SHI43451 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-30 137.1 74 86.5
SHI49835 Sapria himalayana HOM05D001560 ORTHO05D004675 3.1e-30 136.0 135 58.5
SHI50380 Sapria himalayana HOM05D001560 ORTHO05D004675 3.1e-30 136.0 135 58.5
SHI34635 Sapria himalayana HOM05D001560 ORTHO05D004675 4.1e-30 135.6 72 86.1
Nitab4.5_0001127g0220 Nicotiana tabacum HOM05D001560 ORTHO05D004675 9.1e-30 134.4 74 83.8
SHI38213 Sapria himalayana HOM05D001560 ORTHO05D004675 2.6e-29 132.9 74 85.1
SHI34631 Sapria himalayana HOM05D001560 ORTHO05D004675 5.9e-29 131.7 74 85.1
SHI27346 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-28 130.6 71 85.9
TPR.G15690 Trifolium pratense HOM05D001560 ORTHO05D004675 2.9e-28 129.4 92 70.7
SHI38099 Sapria himalayana HOM05D001560 ORTHO05D004675 5.0e-28 128.6 74 83.8
C01p34850 Brassica napus HOM05D001560 ORTHO05D004675 6.1e-26 121.7 57 98.2
PGSC0003DMG400020882 Solanum tuberosum HOM05D001560 ORTHO05D004675 2.0e-24 116.7 69 82.6
Nitab4.5_0000661g0100 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.3e-23 114.0 64 82.8
SHI33106 Sapria himalayana HOM05D000743 ORTHO05D000580 8.2e-23 111.3 59 93.2
Prupe.2G039100 Prunus persica HOM05D001560 ORTHO05D004675 4.1e-22 109.0 61 90.2
BraSC48t46315Z Brassica rapa HOM05D001560 ORTHO05D004675 5.9e-21 105.1 51 96.1
CsaV3_5G015880 Cucumis sativus L. HOM05D001560 ORTHO05D004675 3.6e-18 95.9 49 87.8
SHI44216 Sapria himalayana HOM05D001560 ORTHO05D004675 8.0e-18 94.7 69 68.1
SHI35323 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-16 90.9 58 75.9
SHI36269 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-16 90.5 111 48.6
Nitab4.5_0019346g0010 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.7e-15 87.0 44 90.9
SHI38481 Sapria himalayana HOM05D001560 ORTHO05D004675 9.1e-14 81.3 181 34.3
Nitab4.5_0001152g0580 Nicotiana tabacum HOM05D001560 ORTHO05D004675 3.8e-12 75.9 45 75.6
SHI33107 Sapria himalayana HOM05D001560 ORTHO05D004675 3.8e-12 75.9 50 72.0
EL10Ac7g17432 Beta vulgaris HOM05D001560 ORTHO05D004675 4.0e-09 65.9 35 82.9
SHI35288 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-08 63.9 69 49.3
Nitab4.5_0003709g0080 Nicotiana tabacum HOM05D012582 ORTHO05D011721 3.4e-08 62.8 30 93.3
DCAR_022732 Daucus carota HOM05D001560 ORTHO05D004675 4.4e-08 62.4 30 90.0
Medtr8g059730 Medicago truncatula HOM05D001560 ORTHO05D004675 7.5e-08 61.6 43 62.8
SHI36570 Sapria himalayana HOM05D001560 ORTHO05D004675 9.8e-08 61.2 33 87.9
SHI42054 Sapria himalayana HOM05D001560 ORTHO05D004675 4.1e-06 55.8 27 92.6


User provided reference genes

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