Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATCG01120 Arabidopsis thaliana HOM05D000533 ORTHO05D010350 2.2e-39 165.2 89 100.0
CARHR282480 Cardamine hirsuta HOM05D000533 ORTHO05D010350 7.2e-38 160.2 89 96.6
BolC7t43859H Brassica oleracea HOM05D000533 ORTHO05D010350 1.8e-36 155.6 89 93.3
BolC2t10602H Brassica oleracea HOM05D000533 ORTHO05D010350 3.0e-36 154.8 89 93.3
BolSC29t60511H Brassica oleracea HOM05D000533 ORTHO05D010350 3.0e-36 154.8 89 93.3
BolSC35t60709H Brassica oleracea HOM05D000533 ORTHO05D010350 3.0e-36 154.8 89 93.3
BolSC37t60798H Brassica oleracea HOM05D000533 ORTHO05D010350 3.0e-36 154.8 89 93.3
BraSC138t45530Z Brassica rapa HOM05D000533 ORTHO05D010350 3.0e-36 154.8 89 93.3
BraSC143t45655Z Brassica rapa HOM05D000533 ORTHO05D010350 3.0e-36 154.8 89 93.3
BraSC25t45915Z Brassica rapa HOM05D000533 ORTHO05D010350 3.0e-36 154.8 89 93.3
BraSC59t46555Z Brassica rapa HOM05D000533 ORTHO05D010350 3.0e-36 154.8 89 93.3
BolSC35t60687H Brassica oleracea HOM05D000533 ORTHO05D010350 7.4e-35 150.2 89 93.3
Eucgr.C01838 Eucalyptus grandis HOM05D000533 ORTHO05D010350 7.7e-32 140.2 84 86.9
CAN.G1470.7 Capsicum annuum HOM05D000533 ORTHO05D010350 2.2e-31 138.7 89 85.4
CAN.G965.2 Capsicum annuum HOM05D000533 ORTHO05D010350 2.2e-31 138.7 89 85.4
PGSC0003DMG400029905 Solanum tuberosum HOM05D000533 ORTHO05D010350 1.5e-30 136.0 89 84.3
HanXRQChr00c0336g0573701 Helianthus annuus HOM05D000533 ORTHO05D001069 7.2e-30 133.7 91 79.1
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 7.2e-30 133.7 91 79.1
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 7.2e-30 133.7 91 79.1
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 7.2e-30 133.7 91 79.1
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 7.2e-30 133.7 91 79.1
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 7.2e-30 133.7 91 79.1
Oeu058352.1 Olea europaea HOM05D000533 ORTHO05D010350 7.2e-30 133.7 91 81.3
Gohir.D11G334200 Gossypium hirsutum HOM05D000533 ORTHO05D010350 1.2e-29 132.9 91 78.0
PGR111G0065 Punica granatum HOM05D000533 ORTHO05D010350 1.2e-29 132.9 91 80.2
Nn1g08630 Nelumbo nucifera HOM05D000533 ORTHO05D010350 1.6e-29 132.5 91 83.5
Potri.012G027700 Populus trichocarpa HOM05D000533 ORTHO05D010350 2.1e-29 132.1 91 79.1
Gohir.A01G140394 Gossypium hirsutum HOM05D000533 ORTHO05D010350 1.0e-28 129.8 85 78.8
RcHm_v2.0_Chr3g0470821 Rosa chinensis HOM05D000533 ORTHO05D010350 1.0e-28 129.8 91 75.8
DCAR_032543 Daucus carota HOM05D000533 ORTHO05D010350 1.4e-28 129.4 88 79.5
Sed0000963 Sechium edule HOM05D000533 ORTHO05D010350 3.0e-28 128.3 91 75.8
LjContig00318g0021062 Lotus japonicus HOM05D000533 ORTHO05D010350 8.8e-28 126.7 85 78.8
LjContig00319g0004235 Lotus japonicus HOM05D000533 ORTHO05D010350 8.8e-28 126.7 85 78.8
Gohir.A04G053052 Gossypium hirsutum HOM05D000533 ORTHO05D010350 2.0e-27 125.6 88 76.1
Lalb_Chr07g0191831 Lupinus albus HOM05D000533 ORTHO05D010350 2.6e-27 125.2 84 79.8
Gohir.1Z050566 Gossypium hirsutum HOM05D000533 ORTHO05D010350 3.3e-27 124.8 79 81.0
Gohir.1Z049594 Gossypium hirsutum HOM05D000533 ORTHO05D010350 9.7e-27 123.2 78 79.5
Lalb_Chr15g0080711 Lupinus albus HOM05D000533 ORTHO05D010350 9.7e-27 123.2 84 78.6
Gohir.A13G086380 Gossypium hirsutum HOM05D000533 ORTHO05D010350 1.7e-26 122.5 79 79.7
Lalb_Chr20g0108591 Lupinus albus HOM05D000533 ORTHO05D010350 2.2e-26 122.1 84 78.6
Medtr0002s0210 Medicago truncatula HOM05D000533 ORTHO05D010350 2.2e-26 122.1 75 81.3
MD09G1289300 Malus domestica HOM05D000533 ORTHO05D010350 1.8e-25 119.0 80 76.2
Gorai.006G055100 Gossypium raimondii HOM05D000533 ORTHO05D010350 5.3e-25 117.5 79 78.5
MD12G1237700 Malus domestica HOM05D000533 ORTHO05D010350 7.0e-25 117.1 78 75.6
Lalb_Chr03g0030911 Lupinus albus HOM05D000533 ORTHO05D010350 1.6e-24 115.9 82 76.8
Medtr4g006090 Medicago truncatula HOM05D000533 ORTHO05D010350 1.6e-24 115.9 92 71.7
Hund27629 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.6e-24 115.9 83 74.7
Hund28852 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.6e-24 115.9 83 74.7
Hund28975 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.6e-24 115.9 83 74.7
Hund29088 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.6e-24 115.9 83 74.7
Hund29432 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.6e-24 115.9 83 74.7
Hund29500 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.6e-24 115.9 83 74.7
Gohir.D06G106350 Gossypium hirsutum HOM05D000533 ORTHO05D010350 3.5e-24 114.8 79 74.7
BolC9t56911H Brassica oleracea HOM05D000533 ORTHO05D010350 4.5e-24 114.4 68 88.2
Peaxi162Scf00030g02115 Petunia axillaris HOM05D000533 ORTHO05D010350 4.5e-24 114.4 137 55.5
Gohir.D13G114450 Gossypium hirsutum HOM05D000533 ORTHO05D010350 7.7e-24 113.6 79 75.9
Medtr6g042190 Medicago truncatula HOM05D000533 ORTHO05D010350 7.7e-24 113.6 92 70.7
Gorai.013G128500 Gossypium raimondii HOM05D000533 ORTHO05D010350 1.0e-23 113.2 79 75.9
Medtr7g021690 Medicago truncatula HOM05D001070 ORTHO05D005132 1.3e-23 112.8 80 75.0
SGA_v2.0_scaffold150G36658 Striga asiatica HOM05D000533 ORTHO05D010350 1.7e-23 112.5 78 70.5
BolSC49t61148H Brassica oleracea HOM05D000533 ORTHO05D010350 2.9e-23 111.7 74 81.1
Gohir.D11G237260 Gossypium hirsutum HOM05D000533 ORTHO05D010350 2.9e-23 111.7 76 73.7
Lsat_1_v5_gn_5_821 Lactuca sativa HOM05D000533 ORTHO05D001069 4.2e-22 107.8 61 91.8
BolSC45t60904H Brassica oleracea HOM05D000533 ORTHO05D010350 1.6e-21 105.9 66 84.8
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 2.1e-21 105.5 72 77.8
Gorai.011G221100 Gossypium raimondii HOM05D000533 ORTHO05D010350 3.6e-21 104.8 73 71.2
BolSC29t60551H Brassica oleracea HOM05D000533 ORTHO05D010350 4.7e-21 104.4 68 80.9
C09p40120 Brassica napus HOM05D000890 ORTHO05D000697 3.0e-20 101.7 58 91.4
MD08G1073600 Malus domestica HOM05D000533 ORTHO05D010350 5.2e-20 100.9 64 78.1
Nitab4.5_0006409g0070 Nicotiana tabacum HOM05D001070 ORTHO05D010350 8.8e-20 100.1 56 89.3
Hund30643 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.6e-19 98.6 66 78.8
BolC5t34052H Brassica oleracea HOM05D000533 ORTHO05D010350 3.4e-19 98.2 60 88.3
Peaxi162Scf00147g00312 Petunia axillaris HOM05D000445 ORTHO05D010350 2.4e-17 92.0 59 83.1
Medtr1g041540 Medicago truncatula HOM05D000533 ORTHO05D001069 2.0e-16 89.0 68 70.6
BolSC44t60827H Brassica oleracea HOM05D000533 ORTHO05D010350 2.7e-16 88.6 71 69.0
HanXRQChr17g0560431 Helianthus annuus HOM05D000533 ORTHO05D010350 5.9e-16 87.4 67 70.1
MD12G1214000 Malus domestica HOM05D000533 ORTHO05D010350 2.1e-13 79.0 48 77.1
Hund03919 Selenicereus undatus HOM05D000533 ORTHO05D010350 3.6e-13 78.2 56 71.4
Phvul.001G058350 Phaseolus vulgaris HOM05D000533 ORTHO05D010350 1.5e-11 72.8 54 70.4
HanXRQChr00c0690g0576771 Helianthus annuus HOM05D000533 ORTHO05D010350 4.4e-11 71.2 59 67.8
MD12G1021800 Malus domestica HOM05D000533 ORTHO05D010350 3.7e-10 68.2 45 75.6
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 2.0e-08 62.4 61 57.4
MCO09G555 Micromonas commoda HOM05D000533 ORTHO05D010350 2.7e-08 62.0 66 47.0
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 3.5e-08 61.6 74 44.6
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 4.5e-08 61.2 85 38.8
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 8.6e-07 57.0 67 41.8


User provided reference genes

Program Settings