Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATCG01020 Arabidopsis thaliana HOM05D008285 ORTHO05D010431 6.2e-21 103.2 53 100.0
C09p40390 Brassica napus HOM05D008285 ORTHO05D010431 6.2e-21 103.2 53 100.0
BolSC29t60502H Brassica oleracea HOM05D008285 ORTHO05D010431 6.2e-21 103.2 53 100.0
BolSC35t60700H Brassica oleracea HOM05D008285 ORTHO05D010431 6.2e-21 103.2 53 100.0
BolSC44t60819H Brassica oleracea HOM05D008285 ORTHO05D010431 6.2e-21 103.2 53 100.0
BraSC103t45425Z Brassica rapa HOM05D008285 ORTHO05D010431 6.2e-21 103.2 53 100.0
BraSC138t45538Z Brassica rapa HOM05D008285 ORTHO05D010431 6.2e-21 103.2 53 100.0
BraSC25t45906Z Brassica rapa HOM05D008285 ORTHO05D010431 6.2e-21 103.2 53 100.0
BraSC59t46547Z Brassica rapa HOM05D008285 ORTHO05D010431 6.2e-21 103.2 53 100.0
BolC9t56809H Brassica oleracea HOM05D008285 ORTHO05D010431 4.0e-20 100.5 53 98.1
BolC9t56929H Brassica oleracea HOM05D008285 ORTHO05D010431 4.5e-19 97.1 53 94.3
C02p28770 Brassica napus HOM05D008285 ORTHO05D010431 9.9e-19 95.9 53 92.5
BolC2t08924H Brassica oleracea HOM05D008285 ORTHO05D010431 9.9e-19 95.9 53 92.5
CARHR282410 Cardamine hirsuta HOM05D008285 ORTHO05D010431 9.9e-19 95.9 53 96.2
BolC2t10592H Brassica oleracea HOM05D008285 ORTHO05D010431 4.9e-18 93.6 49 98.0
CSS0043912 Camellia sinensis var. sinensis HOM05D008285 ORTHO05D010431 8.4e-18 92.8 50 92.0
Hma1.2p1_0859F.1_g229500 Hydrangea macrophylla HOM05D008285 ORTHO05D010431 3.2e-17 90.9 50 90.0
Manes.18G138300 Manihot esculenta HOM05D008285 ORTHO05D010431 1.2e-16 89.0 52 88.5
Nn031s41612 Nelumbo nucifera HOM05D008285 ORTHO05D010431 1.6e-16 88.6 50 88.0
Nn064s42214 Nelumbo nucifera HOM05D008285 ORTHO05D010431 1.6e-16 88.6 50 88.0
PGSC0003DMG400000878 Solanum tuberosum HOM05D008285 ORTHO05D010431 4.6e-16 87.0 52 84.6
Gohir.1Z049931 Gossypium hirsutum HOM05D008285 ORTHO05D010431 7.9e-16 86.3 50 84.0
Gohir.A01G140110 Gossypium hirsutum HOM05D008285 ORTHO05D010431 7.9e-16 86.3 50 84.0
Gohir.A02G134106 Gossypium hirsutum HOM05D008285 ORTHO05D010431 7.9e-16 86.3 50 84.0
Gorai.009G442800 Gossypium raimondii HOM05D008285 ORTHO05D010431 7.9e-16 86.3 50 84.0
PGR111G0120 Punica granatum HOM05D008285 ORTHO05D010431 7.9e-16 86.3 50 86.0
SalBow1G4672 Salvia bowleyana HOM05D008285 ORTHO05D010431 7.9e-16 86.3 50 86.0
SalBow1G6462 Salvia bowleyana HOM05D008285 ORTHO05D010431 7.9e-16 86.3 50 86.0
DCAR_032534 Daucus carota HOM05D008285 ORTHO05D010431 1.3e-15 85.5 52 84.6
Gohir.1Z049481 Gossypium hirsutum HOM05D008285 ORTHO05D010431 1.8e-15 85.1 50 84.0
RcHm_v2.0_CPg0502841 Rosa chinensis HOM05D008285 ORTHO05D010431 2.3e-15 84.7 53 83.0
Nn212s45209 Nelumbo nucifera HOM05D008285 ORTHO05D010431 3.9e-15 84.0 51 86.3
PSO548G0110 Papaver somniferum HOM05D008285 ORTHO05D010431 3.9e-15 84.0 50 88.0
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 6.7e-15 83.2 52 76.9
HanXRQCPg0580381 Helianthus annuus HOM05D008285 ORTHO05D010431 8.7e-15 82.8 50 86.0
Gohir.A12G229600 Gossypium hirsutum HOM05D008285 ORTHO05D010431 1.1e-14 82.4 50 80.0
PSO063G2603 Papaver somniferum HOM05D008285 ORTHO05D010431 1.1e-14 82.4 52 78.8
RcHm_v2.0_Chr4g0421191 Rosa chinensis HOM05D008285 ORTHO05D010431 1.1e-14 82.4 53 81.1
Nn8g41105 Nelumbo nucifera HOM05D008285 ORTHO05D010431 1.5e-14 82.0 50 82.0
BolSC45t60913H Brassica oleracea HOM05D008285 ORTHO05D010431 2.5e-14 81.3 49 91.8
PSO339G5238 Papaver somniferum HOM05D008285 ORTHO05D010431 2.5e-14 81.3 52 76.9
Nn1g08636 Nelumbo nucifera HOM05D008285 ORTHO05D010431 4.3e-14 80.5 50 84.0
Solyc03g013610.1 Solanum lycopersicum HOM05D008285 ORTHO05D010431 3.7e-13 77.4 52 78.8
Lalb_Chr07g0191721 Lupinus albus HOM05D008285 ORTHO05D010431 1.1e-12 75.9 49 79.6
CAN.G1045.12 Capsicum annuum HOM05D008285 ORTHO05D010431 1.8e-12 75.1 47 80.9
CAN.G1045.15 Capsicum annuum HOM05D008285 ORTHO05D010431 1.8e-12 75.1 47 80.9
CAN.G222.14 Capsicum annuum HOM05D008285 ORTHO05D010431 1.8e-12 75.1 47 80.9
CAN.G413.8 Capsicum annuum HOM05D008285 ORTHO05D010431 1.8e-12 75.1 47 80.9
CAN.G657.10 Capsicum annuum HOM05D008285 ORTHO05D010431 1.8e-12 75.1 47 80.9
CAN.G1431.2 Capsicum annuum HOM05D008285 ORTHO05D010431 5.3e-12 73.6 47 78.7
CAN.G965.8 Capsicum annuum HOM05D008285 ORTHO05D010431 9.0e-12 72.8 47 78.7
Nitab4.5_0015353g0010 Nicotiana tabacum HOM05D008285 ORTHO05D010431 1.2e-11 72.4 45 84.4
SGA_v2.0_scaffold36G14477 Striga asiatica HOM05D008285 ORTHO05D010431 1.5e-11 72.0 46 80.4
CAN.G1324.6 Capsicum annuum HOM05D008285 ORTHO05D010431 2.0e-11 71.6 47 78.7
CAN.G8.24 Capsicum annuum HOM05D008285 ORTHO05D010431 2.6e-11 71.2 47 76.6
CAN.G213.15 Capsicum annuum HOM05D008285 ORTHO05D010431 4.5e-11 70.5 47 76.6
Medtr4g006140 Medicago truncatula HOM05D008285 ORTHO05D010431 5.8e-11 70.1 44 77.3
CAN.G262.5 Capsicum annuum HOM05D008285 ORTHO05D010431 3.8e-10 67.4 52 67.3
Psat5g142800 Pisum sativum HOM05D008285 ORTHO05D010431 1.1e-09 65.9 46 71.7
Aqoxy1G03262 Aquilegia oxysepala HOM05D008285 ORTHO05D010431 1.9e-09 65.1 49 69.4
BraSC58t46459Z Brassica rapa HOM05D067706 ORTHO05D010431 1.3e-07 58.9 45 68.9
Potri.009G163200 Populus trichocarpa HOM05D008285 ORTHO05D010431 1.3e-07 58.9 51 62.7
Glyma.18G193100 Glycine max HOM05D008285 ORTHO05D010431 5.1e-07 57.0 50 58.0


User provided reference genes

Program Settings