Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATCG00600 Arabidopsis thaliana HOM05D007838 ORTHO05D009977 2.2e-12 74.3 38 100.0
PGR111G0072 Punica granatum HOM05D007838 ORTHO05D009977 2.2e-12 74.3 38 100.0
CAN.G1209.43 Capsicum annuum HOM05D007838 ORTHO05D009977 1.1e-11 72.0 38 97.4
CAN.G3365.1 Capsicum annuum HOM05D007838 ORTHO05D009977 1.1e-11 72.0 38 97.4
CAN.G735.3 Capsicum annuum HOM05D007838 ORTHO05D009977 1.1e-11 72.0 38 97.4
CAN.G89.3 Capsicum annuum HOM05D007838 ORTHO05D009977 1.1e-11 72.0 38 97.4
Migut.D01430 Erythranthe guttata HOM05D007838 ORTHO05D009977 1.1e-11 72.0 38 97.4
Glyma.12G232500 Glycine max HOM05D007838 ORTHO05D009977 1.1e-11 72.0 38 97.4
Gohir.1Z049576 Gossypium hirsutum HOM05D007838 ORTHO05D009977 1.1e-11 72.0 38 97.4
Gohir.1Z050380 Gossypium hirsutum HOM05D007838 ORTHO05D009977 1.1e-11 72.0 38 97.4
Gohir.A04G039165 Gossypium hirsutum HOM05D007838 ORTHO05D009977 1.1e-11 72.0 38 97.4
Gohir.D01G101969 Gossypium hirsutum HOM05D007838 ORTHO05D009977 1.1e-11 72.0 38 97.4
Gohir.D02G149400 Gossypium hirsutum HOM05D007838 ORTHO05D009977 1.1e-11 72.0 38 97.4
Lalb_Chr02g0146741 Lupinus albus HOM05D007838 ORTHO05D009977 1.1e-11 72.0 38 97.4
Manes.09G082802 Manihot esculenta HOM05D007838 ORTHO05D009977 1.1e-11 72.0 38 97.4
Lsat_1_v5_gn_9_40661 Lactuca sativa HOM05D007838 ORTHO05D009977 1.4e-11 71.6 36 100.0
A06p23150 Brassica napus HOM05D007838 ORTHO05D009977 1.9e-11 71.2 38 97.4
C06p22990 Brassica napus HOM05D007838 ORTHO05D009977 1.9e-11 71.2 38 97.4
BolSC29t60473H Brassica oleracea HOM05D007838 ORTHO05D009977 1.9e-11 71.2 38 97.4
BolSC35t60654H Brassica oleracea HOM05D007838 ORTHO05D009977 1.9e-11 71.2 38 97.4
BolSC35t60743H Brassica oleracea HOM05D007838 ORTHO05D009977 1.9e-11 71.2 38 97.4
BolSC46t61006H Brassica oleracea HOM05D007838 ORTHO05D009977 1.9e-11 71.2 38 97.4
BolSC46t61028H Brassica oleracea HOM05D007838 ORTHO05D009977 1.9e-11 71.2 38 97.4
BolSC47t61090H Brassica oleracea HOM05D007838 ORTHO05D009977 1.9e-11 71.2 38 97.4
BolSC49t61176H Brassica oleracea HOM05D007838 ORTHO05D009977 1.9e-11 71.2 38 97.4
BraSC103t45458Z Brassica rapa HOM05D007838 ORTHO05D009977 1.9e-11 71.2 38 97.4
BraSC138t45569Z Brassica rapa HOM05D007838 ORTHO05D009977 1.9e-11 71.2 38 97.4
BraSC25t45859Z Brassica rapa HOM05D007838 ORTHO05D009977 1.9e-11 71.2 38 97.4
BraSC58t46428Z Brassica rapa HOM05D007838 ORTHO05D009977 1.9e-11 71.2 38 97.4
BraSC58t46490Z Brassica rapa HOM05D007838 ORTHO05D009977 1.9e-11 71.2 38 97.4
arahy.Tifrunner.gnm1.ann1.L7VI35 Arachis hypogaea HOM05D007838 ORTHO05D009977 2.5e-11 70.9 38 94.7
Nitab4.5_0000172g1670 Nicotiana tabacum HOM05D007838 ORTHO05D009977 2.5e-11 70.9 38 94.7
FAN01G2511 Fragaria x ananassa HOM05D007838 ORTHO05D009977 3.2e-11 70.5 38 94.7
PSO548G0106 Papaver somniferum HOM05D007838 ORTHO05D009977 5.5e-11 69.7 38 94.7
DCAR_032503 Daucus carota HOM05D007838 ORTHO05D009977 7.1e-11 69.3 38 92.1
Gohir.A08G058700 Gossypium hirsutum HOM05D007838 ORTHO05D009977 7.1e-11 69.3 36 94.4
Medtr4g050840 Medicago truncatula HOM05D007838 ORTHO05D009977 9.3e-11 68.9 38 94.7
Medtr8g045220 Medicago truncatula HOM05D007838 ORTHO05D010957 9.3e-11 68.9 38 94.7
Lsat_1_v5_gn_2_43920 Lactuca sativa HOM05D007838 ORTHO05D009977 1.2e-10 68.6 36 94.4
C04p42990 Brassica napus HOM05D007838 ORTHO05D009977 1.6e-10 68.2 37 94.6
BolC4t25869H Brassica oleracea HOM05D007838 ORTHO05D009977 1.6e-10 68.2 37 94.6
Gohir.D10G174500 Gossypium hirsutum HOM05D007838 ORTHO05D009977 2.1e-10 67.8 38 92.1
Gorai.011G195200 Gossypium raimondii HOM05D007838 ORTHO05D009977 2.1e-10 67.8 38 92.1
Glyma.15G238851 Glycine max HOM05D007838 ORTHO05D009977 2.7e-10 67.4 38 92.1
Gohir.D09G077600 Gossypium hirsutum HOM05D007838 ORTHO05D009977 2.7e-10 67.4 38 86.8
Gorai.006G092700 Gossypium raimondii HOM05D007838 ORTHO05D009977 2.7e-10 67.4 38 86.8
Gorai.008G125900 Gossypium raimondii HOM05D007838 ORTHO05D009977 2.7e-10 67.4 38 92.1
Gorai.010G129500 Gossypium raimondii HOM05D007838 ORTHO05D009977 2.7e-10 67.4 38 86.8
Thecc.05G288700 Theobroma cacao HOM05D007838 ORTHO05D009977 2.7e-10 67.4 38 89.5
Gorai.008G082200 Gossypium raimondii HOM05D007838 ORTHO05D009977 3.5e-10 67.0 38 92.1
Sed0004112 Sechium edule HOM05D007838 ORTHO05D009977 4.6e-10 66.6 35 97.1
Sed0011977 Sechium edule HOM05D007838 ORTHO05D009977 4.6e-10 66.6 35 97.1
Sed0012227 Sechium edule HOM05D007838 ORTHO05D009977 4.6e-10 66.6 35 97.1
Sed0018017 Sechium edule HOM05D007838 ORTHO05D009977 4.6e-10 66.6 35 97.1
Sed0025969 Sechium edule HOM05D007838 ORTHO05D009977 4.6e-10 66.6 35 97.1
C02p43550 Brassica napus HOM05D007838 ORTHO05D009977 6.0e-10 66.2 38 92.1
BolC4t27990H Brassica oleracea HOM05D007838 ORTHO05D009977 6.0e-10 66.2 38 92.1
Gohir.A12G071400 Gossypium hirsutum HOM05D007838 ORTHO05D009977 6.0e-10 66.2 38 86.8
Gohir.D05G260200 Gossypium hirsutum HOM05D007838 ORTHO05D009977 7.9e-10 65.9 38 92.1
Gorai.009G272100 Gossypium raimondii HOM05D007838 ORTHO05D009977 7.9e-10 65.9 38 92.1
Gohir.D02G168200 Gossypium hirsutum HOM05D007838 ORTHO05D009977 1.0e-09 65.5 38 89.5
Gohir.A05G258400 Gossypium hirsutum HOM05D007838 ORTHO05D009977 3.0e-09 63.9 38 89.5
LjContig00318g0023250 Lotus japonicus HOM05D008505 ORTHO05D010735 3.9e-09 63.5 35 91.4
Nn6g35368 Nelumbo nucifera HOM05D007838 ORTHO05D009977 6.7e-09 62.8 32 96.9
Nn8g40936 Nelumbo nucifera HOM05D007838 ORTHO05D009977 6.7e-09 62.8 32 100.0
Gohir.D12G069602 Gossypium hirsutum HOM05D007838 ORTHO05D009977 1.1e-08 62.0 38 84.2
Gohir.D08G229000 Gossypium hirsutum HOM05D007838 ORTHO05D009977 1.5e-08 61.6 38 84.2
Gohir.D09G046750 Gossypium hirsutum HOM05D007838 ORTHO05D009977 1.5e-08 61.6 38 86.8
Gorai.005G167300 Gossypium raimondii HOM05D007838 ORTHO05D009977 1.5e-08 61.6 33 97.0
Gorai.007G243900 Gossypium raimondii HOM05D007838 ORTHO05D009977 1.9e-08 61.2 38 84.2
Gohir.D01G169066 Gossypium hirsutum HOM05D007838 ORTHO05D009977 2.5e-08 60.8 38 81.6
Gorai.002G210400 Gossypium raimondii HOM05D007838 ORTHO05D009977 2.5e-08 60.8 38 81.6
Gohir.D07G082220 Gossypium hirsutum HOM05D007838 ORTHO05D009977 3.3e-08 60.5 38 86.8
Gorai.001G087500 Gossypium raimondii HOM05D007838 ORTHO05D009977 4.3e-08 60.1 38 84.2
Gorai.008G076200 Gossypium raimondii HOM05D007838 ORTHO05D009977 4.3e-08 60.1 38 81.6
Gohir.A13G074350 Gossypium hirsutum HOM05D007838 ORTHO05D009977 5.7e-08 59.7 38 81.6
RcHm_v2.0_Chr2g0136521 Rosa chinensis HOM05D007838 ORTHO05D009977 5.7e-08 59.7 34 88.2
Gohir.A11G221002 Gossypium hirsutum HOM05D007838 ORTHO05D009977 7.4e-08 59.3 31 93.5
Gohir.D06G113625 Gossypium hirsutum HOM05D008505 ORTHO05D010735 1.3e-07 58.5 31 93.5
CSS0003194 Camellia sinensis var. sinensis HOM05D007838 ORTHO05D009977 1.4e-06 55.1 34 85.3
Migut.D01275 Erythranthe guttata HOM05D007838 ORTHO05D009977 1.4e-06 55.1 33 84.8
Potri.003G048150 Populus trichocarpa HOM05D007838 ORTHO05D009977 3.1e-06 53.9 38 78.9
Gohir.A07G077633 Gossypium hirsutum HOM05D007838 ORTHO05D216864 4.0e-06 53.5 38 76.3


User provided reference genes

Program Settings