Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 5.4e-77 291.2 177 100.0
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 8.9e-72 273.9 177 90.4
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 2.5e-58 229.2 182 83.5
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.4e-53 213.4 182 71.4
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.4e-53 213.4 182 71.4
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.4e-53 213.4 182 71.4
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 2.1e-52 209.5 178 76.4
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 2.1e-52 209.5 178 76.4
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 2.7e-52 209.1 178 74.2
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 2.7e-52 209.1 178 74.2
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 4.6e-52 208.4 182 78.0
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 1.0e-51 207.2 182 75.8
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 1.0e-51 207.2 182 73.6
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 1.3e-51 206.8 178 74.7
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 1.7e-51 206.5 182 69.2
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 1.7e-51 206.5 182 69.2
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 2.1e-49 199.5 181 66.3
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 2.8e-49 199.1 182 80.8
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 9.9e-47 190.7 178 66.9
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 2.4e-45 186.0 178 65.7
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 2.4e-45 186.0 178 65.7
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 3.2e-45 185.7 178 66.3
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 7.1e-45 184.5 178 65.7
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 3.5e-44 182.2 177 62.7
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.3e-25 120.6 186 57.0
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.1e-24 117.5 120 59.2
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 4.5e-23 112.1 111 55.9
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 7.6e-23 111.3 187 41.2
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 2.2e-22 109.8 107 54.2
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 4.2e-21 105.5 121 52.9
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 5.5e-21 105.1 112 52.7
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 7.1e-21 104.8 185 38.4
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 3.5e-20 102.4 116 53.4
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 4.6e-20 102.1 106 54.7
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 1.0e-19 100.9 114 51.8
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.0e-19 99.4 108 50.0
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 3.9e-19 99.0 176 36.9
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.9e-19 99.0 176 36.9
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 3.9e-19 99.0 137 39.4
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 6.7e-19 98.2 102 52.0
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.5e-18 97.1 133 43.6
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 2.5e-18 96.3 115 50.4
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 3.3e-18 95.9 108 52.8
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 3.3e-18 95.9 121 47.9
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 3.3e-18 95.9 185 37.8
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 4.3e-18 95.5 121 46.3
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 5.7e-18 95.1 109 50.5
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 9.6e-18 94.4 118 48.3
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 9.6e-18 94.4 103 51.5
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 1.3e-17 94.0 121 47.9
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.3e-17 94.0 121 47.1
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 1.3e-17 94.0 136 41.9
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 2.8e-17 92.8 146 42.5
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.8e-17 92.8 103 55.3
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 2.8e-17 92.8 109 49.5
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 3.7e-17 92.4 122 48.4
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 3.7e-17 92.4 121 47.1
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 4.8e-17 92.0 105 52.4
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 4.8e-17 92.0 119 46.2
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.8e-17 92.0 120 46.7
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 4.8e-17 92.0 117 45.3
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 4.8e-17 92.0 113 53.1
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 4.8e-17 92.0 120 46.7
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.2e-17 91.7 120 46.7
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.2e-17 91.7 104 49.0
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 6.2e-17 91.7 102 48.0
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 8.2e-17 91.3 111 52.3
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 8.2e-17 91.3 111 52.3
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 8.2e-17 91.3 105 48.6
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 1.1e-16 90.9 187 35.8
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.8e-16 90.1 122 42.6
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 2.4e-16 89.7 114 46.5
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 3.1e-16 89.4 111 47.7
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 3.1e-16 89.4 114 45.6
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 3.1e-16 89.4 115 48.7
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 3.1e-16 89.4 123 45.5
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 4.1e-16 89.0 120 45.0
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 5.3e-16 88.6 138 40.6
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 6.9e-16 88.2 98 50.0
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 6.9e-16 88.2 117 46.2
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 9.0e-16 87.8 110 47.3
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 9.0e-16 87.8 123 43.9
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 9.0e-16 87.8 119 47.1
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 9.0e-16 87.8 108 49.1
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.2e-15 87.4 121 44.6
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.2e-15 87.4 102 52.9
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 1.2e-15 87.4 114 48.2
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.5e-15 87.0 121 44.6
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.5e-15 87.0 124 41.1
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 1.5e-15 87.0 134 40.3
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 2.0e-15 86.7 108 47.2
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 2.0e-15 86.7 108 45.4
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 2.0e-15 86.7 121 45.5
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 2.0e-15 86.7 106 50.0
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 2.6e-15 86.3 103 49.5
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 2.6e-15 86.3 104 47.1
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.4e-15 85.9 183 33.9
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 4.5e-15 85.5 115 45.2
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 4.5e-15 85.5 119 44.5
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 4.5e-15 85.5 99 50.5
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 4.5e-15 85.5 102 50.0
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 5.8e-15 85.1 105 49.5
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 5.8e-15 85.1 112 49.1
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 5.8e-15 85.1 111 49.5
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 5.8e-15 85.1 121 44.6
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 5.8e-15 85.1 144 39.6
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 7.6e-15 84.7 102 47.1
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 1.0e-14 84.3 112 45.5
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 1.3e-14 84.0 129 42.6
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 1.3e-14 84.0 109 48.6
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 1.3e-14 84.0 109 48.6
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 1.7e-14 83.6 128 46.9
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.7e-14 83.6 152 38.2
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 2.9e-14 82.8 112 44.6
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 3.8e-14 82.4 119 46.2
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 3.8e-14 82.4 105 47.6
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 5.0e-14 82.0 120 42.5
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 5.0e-14 82.0 109 45.0
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 6.5e-14 81.6 110 46.4
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 6.5e-14 81.6 119 43.7
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 6.5e-14 81.6 119 43.7
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 6.5e-14 81.6 119 46.2
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 6.5e-14 81.6 99 48.5
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 1.1e-13 80.9 113 42.5
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 1.4e-13 80.5 95 51.6
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.4e-13 80.5 100 49.0
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 1.9e-13 80.1 116 47.4
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 2.5e-13 79.7 116 46.6
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 2.5e-13 79.7 106 41.5
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 5.5e-13 78.6 117 44.4
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 7.2e-13 78.2 101 44.6
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 7.2e-13 78.2 59 71.2
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 7.2e-13 78.2 96 47.9
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 7.2e-13 78.2 119 43.7
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 7.2e-13 78.2 111 43.2
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 1.2e-12 77.4 117 42.7
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.6e-12 77.0 141 36.9
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 1.6e-12 77.0 121 47.1
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 2.1e-12 76.6 125 42.4
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 3.5e-12 75.9 101 44.6
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 3.5e-12 75.9 118 41.5
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 3.5e-12 75.9 118 41.5
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 4.6e-12 75.5 145 35.9
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 6.1e-12 75.1 102 44.1
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 1.0e-11 74.3 102 43.1
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.3e-11 73.9 93 46.2
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 3.9e-11 72.4 95 48.4
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.9e-10 70.1 95 46.3
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 1.9e-10 70.1 96 46.9
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 2.2e-09 66.6 98 45.9
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 2.8e-09 66.2 138 34.8
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 3.7e-09 65.9 158 35.4
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 4.8e-09 65.5 98 44.9
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 4.8e-09 65.5 46 65.2
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 4.8e-09 65.5 46 65.2
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 6.3e-09 65.1 46 63.0
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 8.2e-09 64.7 139 35.3
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 8.2e-09 64.7 107 40.2
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 8.2e-09 64.7 45 73.3
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 5.3e-08 62.0 133 34.6
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 2.6e-07 59.7 46 58.7
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 3.4e-07 59.3 52 53.8
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 3.4e-07 59.3 45 62.2
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 7.7e-07 58.2 42 69.0
HPP92_018370 Vanilla planifolia HOM05D007665 ORTHO05D008293 1.0e-06 57.8 52 53.8
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.7e-06 57.0 55 56.4
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 1.7e-06 57.0 89 39.3
Lsat_1_v5_gn_5_85601 Lactuca sativa HOM05D007665 ORTHO05D008293 3.8e-06 55.8 134 31.3
PSO063G5967 Papaver somniferum HOM05D007665 ORTHO05D008293 8.5e-06 54.7 49 55.1


User provided reference genes

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