Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 5.9e-116 421.4 303 100.0
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 6.3e-102 374.8 306 90.8
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 1.5e-90 337.0 306 83.0
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 1.1e-82 310.8 315 84.4
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 5.0e-75 285.4 299 75.3
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 5.6e-74 282.0 277 79.1
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 2.0e-71 273.5 281 76.9
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 5.8e-71 271.9 277 79.8
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 5.8e-71 271.9 277 79.8
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 1.3e-70 270.8 277 67.9
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 1.3e-70 270.8 277 67.9
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 1.7e-70 270.4 277 69.3
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 3.7e-70 269.2 277 67.5
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 3.7e-70 269.2 277 77.3
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 4.9e-70 268.9 276 77.2
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 1.1e-69 267.7 277 78.0
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 1.5e-66 257.3 277 67.1
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 1.1e-64 251.1 278 68.0
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 3.3e-50 203.0 249 58.2
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 5.1e-43 179.1 214 53.3
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 4.5e-23 112.8 215 41.9
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.6e-23 112.1 206 43.2
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.3e-22 111.3 206 43.2
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.2e-22 110.5 206 42.7
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.6e-20 104.4 216 38.4
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.9e-20 102.1 218 38.1
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 7.9e-20 102.1 181 39.8
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 7.9e-20 102.1 215 37.7
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 6.7e-19 99.0 216 37.0
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 8.8e-19 98.6 296 30.7
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.9e-18 97.4 325 31.1
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.7e-18 95.9 319 30.7
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 2.2e-17 94.0 220 35.0
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 4.8e-17 92.8 199 38.2
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 4.8e-17 92.8 204 35.8
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 4.8e-17 92.8 214 35.5
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 6.3e-17 92.4 203 35.0
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 8.2e-17 92.0 210 37.1
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 8.2e-17 92.0 325 30.5
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 1.1e-16 91.7 210 37.6
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 1.4e-16 91.3 179 40.2
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 2.4e-16 90.5 276 30.4
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 2.4e-16 90.5 189 38.1
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 5.3e-16 89.4 216 36.1
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 6.9e-16 89.0 220 35.9
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 1.2e-15 88.2 280 29.6
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 2.0e-15 87.4 191 35.6
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 3.4e-15 86.7 232 35.8
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.4e-15 86.7 232 35.8
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.4e-15 86.7 232 35.8
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 5.9e-15 85.9 232 35.3
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 1.0e-14 85.1 284 29.2
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 1.3e-14 84.7 212 34.4
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 1.3e-14 84.7 212 34.4
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 2.2e-14 84.0 215 35.8
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 2.2e-14 84.0 215 34.9
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 2.2e-14 84.0 209 34.4
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 3.8e-14 83.2 240 33.8
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 3.8e-14 83.2 199 34.7
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 5.0e-14 82.8 212 32.1
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 8.5e-14 82.0 234 34.2
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 8.5e-14 82.0 209 34.4
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.9e-13 80.9 228 32.9
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.9e-13 80.9 185 36.8
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 3.2e-13 80.1 288 34.0
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 9.4e-13 78.6 162 38.3
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 9.4e-13 78.6 223 32.7
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 9.4e-13 78.6 224 35.7
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 1.2e-12 78.2 218 32.1
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 1.6e-12 77.8 315 28.9
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 2.7e-12 77.0 324 27.5
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 4.7e-12 76.3 219 35.2
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 7.9e-12 75.5 206 34.0
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 1.0e-11 75.1 286 28.3
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.0e-11 75.1 208 35.1
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 1.0e-11 75.1 223 34.5
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 1.4e-11 74.7 197 34.0
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 3.9e-11 73.2 190 35.3
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 6.7e-11 72.4 215 34.4
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 8.8e-11 72.0 226 31.9
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 8.8e-11 72.0 195 32.3
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 1.5e-10 71.2 191 34.6
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 2.0e-10 70.9 202 34.2
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 2.6e-10 70.5 192 34.9
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 3.3e-10 70.1 225 32.9
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 4.4e-10 69.7 187 32.1
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 7.4e-10 68.9 207 31.4
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 9.7e-10 68.6 208 31.2
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 1.3e-09 68.2 214 32.2
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 1.7e-09 67.8 187 31.0
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 2.2e-09 67.4 216 30.1
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 2.2e-09 67.4 216 31.5
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 2.8e-09 67.0 213 32.4
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 4.8e-09 66.2 161 37.9
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 8.2e-09 65.5 212 31.6
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.1e-08 65.1 185 35.1
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 2.4e-08 63.9 305 25.9
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 4.1e-08 63.2 180 33.9
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 4.1e-08 63.2 173 32.4
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 4.1e-08 63.2 199 31.2
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.0e-08 62.4 183 33.3
HanXRQChr12g0377191 Helianthus annuus HOM05D005407 ORTHO05D006544 7.0e-08 62.4 94 46.8
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 9.1e-08 62.0 217 32.3
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 9.1e-08 62.0 314 28.7
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 9.1e-08 62.0 248 27.8
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 1.2e-07 61.6 190 32.6
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 1.5e-07 61.2 172 30.8
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 2.6e-07 60.5 153 37.3
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 3.4e-07 60.1 138 34.8
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 5.9e-07 59.3 184 31.5
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 1.0e-06 58.5 207 32.9
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 1.0e-06 58.5 94 37.2
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 1.7e-06 57.8 212 31.1
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 2.2e-06 57.4 194 27.3
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 2.2e-06 57.4 177 31.1
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 2.9e-06 57.0 193 28.0


User provided reference genes

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