Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 3.0e-122 441.8 216 100.0
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 3.1e-119 431.8 217 98.6
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 1.3e-117 426.4 217 97.2
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 6.1e-115 417.5 217 94.9
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 1.8e-111 406.0 217 91.7
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 2.9e-109 398.7 218 90.8
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 5.0e-109 397.9 217 89.4
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 4.2e-108 394.8 209 93.3
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 9.4e-108 393.7 217 87.1
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 6.1e-107 391.0 216 88.9
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 7.9e-107 390.6 216 89.4
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 2.3e-106 389.0 219 89.0
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 2.3e-106 389.0 219 89.0
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 5.7e-105 384.4 220 88.6
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 2.2e-104 382.5 217 88.0
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 4.8e-104 381.3 217 87.1
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 4.8e-104 381.3 217 87.1
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 1.1e-103 380.2 217 87.1
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 1.6e-102 376.3 218 82.6
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 5.9e-102 374.4 218 84.4
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 5.9e-102 374.4 219 82.6
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 1.0e-101 373.6 217 85.7
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 1.0e-101 373.6 218 82.6
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 1.5e-100 369.8 218 82.1
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 8.0e-99 364.0 218 82.1
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 2.3e-98 362.5 218 82.1
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 4.4e-97 358.2 206 86.4
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 2.2e-96 355.9 220 79.5
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 3.7e-96 355.1 220 79.5
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 8.2e-96 354.0 220 79.1
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 4.1e-95 351.7 236 75.4
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 5.3e-95 351.3 217 77.9
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 2.7e-94 349.0 221 78.3
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.5e-94 348.6 221 78.3
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.5e-94 348.2 221 77.8
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.9e-94 347.8 222 77.9
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.7e-93 346.3 221 77.8
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 2.9e-93 345.5 221 77.4
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 5.0e-93 344.7 221 76.9
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 6.5e-93 344.4 221 76.9
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.1e-92 343.6 220 77.7
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 1.5e-92 343.2 218 78.0
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 4.2e-92 341.7 219 76.7
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 9.4e-92 340.5 220 77.3
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 1.6e-91 339.7 220 76.4
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 2.1e-91 339.3 220 77.7
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 4.7e-91 338.2 220 76.8
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 6.1e-91 337.8 220 76.4
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 8.0e-91 337.4 219 76.3
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 8.0e-91 337.4 220 76.8
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 8.0e-91 337.4 219 77.2
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 1.0e-90 337.0 219 75.8
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 1.0e-90 337.0 220 76.4
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 1.4e-90 336.7 220 75.5
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 2.3e-90 335.9 219 75.8
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 2.3e-90 335.9 219 75.3
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 4.0e-90 335.1 219 75.8
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 5.2e-90 334.7 220 75.9
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 5.2e-90 334.7 219 74.9
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 8.8e-90 334.0 219 77.6
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 8.8e-90 334.0 220 76.8
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 1.2e-89 333.6 218 74.8
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.5e-89 333.2 219 76.7
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 1.5e-89 333.2 219 76.3
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 2.6e-89 332.4 219 75.8
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 5.7e-89 331.3 192 83.3
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 9.8e-89 330.5 219 73.5
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 2.8e-88 328.9 219 74.0
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 3.7e-88 328.6 218 73.9
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 3.7e-88 328.6 192 81.8
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 6.3e-88 327.8 219 74.9
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 1.4e-87 326.6 218 75.2
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 1.8e-87 326.2 217 72.8
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.4e-87 325.9 219 74.9
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 4.1e-87 325.1 192 80.7
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 5.4e-87 324.7 192 82.8
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 2.0e-86 322.8 192 79.7
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 5.9e-86 321.2 192 80.2
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 5.9e-86 321.2 220 73.2
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 5.9e-86 321.2 195 77.9
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 7.7e-86 320.9 233 70.8
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 1.3e-85 320.1 219 72.6
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 3.8e-85 318.5 228 71.5
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 5.0e-85 318.2 220 71.4
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.1e-84 317.0 219 73.1
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 1.1e-84 317.0 219 73.1
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 1.9e-84 316.2 225 76.4
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 1.9e-84 316.2 225 76.4
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 1.9e-84 316.2 195 79.5
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 2.1e-83 312.8 220 70.9
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 6.1e-83 311.2 220 76.8
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.8e-82 309.7 219 71.2
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 2.3e-82 309.3 220 70.0
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 1.2e-81 307.0 220 70.5
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 2.6e-81 305.8 220 70.0
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 4.4e-81 305.1 196 76.0
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 4.4e-81 305.1 220 68.6
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 4.4e-81 305.1 220 68.6
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 5.7e-81 304.7 219 70.8
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 9.8e-81 303.9 220 69.1
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 1.3e-80 303.5 197 78.2
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.2e-80 302.8 194 77.8
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 4.9e-80 301.6 232 67.2
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 3.1e-79 298.9 193 76.7
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 7.0e-79 297.7 193 76.2
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 5.9e-78 294.7 219 64.4
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 1.0e-77 293.9 194 73.7
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 2.8e-75 285.8 299 53.8
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 8.9e-74 280.8 210 66.2
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 1.3e-72 276.9 179 77.1
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 4.9e-72 275.0 218 60.1
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 8.3e-72 274.2 219 61.6
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.1e-71 273.9 218 62.4
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.0e-70 269.6 204 67.6
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.7e-70 269.2 221 65.6
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 5.0e-69 265.0 192 69.8
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 5.0e-69 265.0 288 52.4
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 2.5e-68 262.7 212 62.7
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 9.5e-68 260.8 212 62.3
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 2.0e-65 253.1 220 56.4
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 4.4e-65 251.9 218 59.6
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 7.5e-65 251.1 178 72.5
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 8.3e-64 247.7 171 73.1
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 7.0e-63 244.6 168 73.8
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 6.0e-62 241.5 192 62.5
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 3.0e-61 239.2 163 74.2
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 2.5e-60 236.1 219 51.6
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 6.2e-59 231.5 224 52.7
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 3.1e-58 229.2 194 58.8
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 9.2e-55 217.6 158 71.5
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.0e-53 214.2 168 66.7
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 6.6e-53 211.5 195 60.0
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 1.1e-47 194.1 217 48.4
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 1.9e-44 183.3 182 54.9
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 7.3e-44 181.4 160 58.8
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 2.1e-43 179.9 149 59.7
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 2.8e-43 179.5 93 88.2
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 4.0e-34 149.1 220 35.0
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 3.4e-33 146.0 227 35.2
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 2.9e-32 142.9 246 39.4
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.4e-31 139.8 84 79.8
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 2.3e-29 133.3 215 37.2
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 1.9e-28 130.2 84 69.0
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 3.1e-26 122.9 100 68.0
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 6.0e-22 108.6 77 72.7
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.0e-21 107.8 139 44.6
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 8.1e-19 98.2 92 55.4
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 9.0e-10 68.2 144 38.2
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 6.5e-08 62.0 186 23.7


User provided reference genes

Program Settings