Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.7e-52 209.1 110 100.0
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 8.0e-47 190.3 112 89.3
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.2e-39 166.4 110 75.5
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.1e-30 136.7 113 67.3
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.1e-30 135.2 113 70.8
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 2.6e-29 132.1 114 64.0
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 1.1e-27 126.7 119 60.5
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 4.6e-26 121.3 118 64.4
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 1.7e-25 119.4 116 64.7
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 1.7e-25 119.4 116 64.7
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 1.7e-25 119.4 116 64.7
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.6e-23 111.7 126 50.8
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.4e-22 109.0 120 53.3
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 4.0e-22 108.2 112 58.0
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 4.0e-22 108.2 120 51.7
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 5.2e-22 107.8 125 48.8
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.2e-21 106.7 120 51.7
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-20 103.2 115 50.4
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 1.3e-20 103.2 115 50.4
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.9e-20 102.1 116 52.6
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 1.1e-19 100.1 117 48.7
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 1.4e-19 99.8 114 50.0
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 4.1e-19 98.2 115 49.6
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 4.1e-19 98.2 115 49.6
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 4.1e-19 98.2 115 49.6
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 6.0e-18 94.4 122 45.1
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 1.1e-16 90.1 109 48.6
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 1.1e-16 90.1 109 48.6
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 4.3e-16 88.2 115 46.1
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 4.3e-16 88.2 115 46.1
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 7.3e-16 87.4 112 43.8
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 2.1e-15 85.9 125 44.0
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 3.6e-15 85.1 123 45.5
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 6.2e-15 84.3 122 44.3
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 6.2e-15 84.3 121 44.6
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 2.4e-14 82.4 105 46.7
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 2.4e-14 82.4 105 46.7
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 2.4e-14 82.4 105 46.7
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 5.2e-14 81.3 122 42.6
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 9.0e-14 80.5 146 37.7
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 9.0e-14 80.5 127 40.9
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 1.2e-13 80.1 136 39.7
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 2.0e-13 79.3 131 41.2
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 3.4e-13 78.6 134 38.8
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 3.4e-13 78.6 135 38.5
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 3.4e-13 78.6 128 42.2
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 3.4e-13 78.6 121 43.0
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 4.4e-13 78.2 128 39.8
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 5.8e-13 77.8 127 40.2
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 9.9e-13 77.0 132 37.9
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 9.9e-13 77.0 121 40.5
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 9.9e-13 77.0 122 40.2
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.7e-12 76.3 125 37.6
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 2.9e-12 75.5 64 57.8
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 3.8e-12 75.1 125 38.4
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 3.8e-12 75.1 129 37.2
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.8e-12 75.1 128 37.5
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 3.8e-12 75.1 122 39.3
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 4.9e-12 74.7 126 37.3
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 4.9e-12 74.7 125 38.4
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 4.9e-12 74.7 124 42.7
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 8.4e-12 73.9 139 38.1
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 8.4e-12 73.9 139 38.1
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 8.4e-12 73.9 132 37.1
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 8.4e-12 73.9 124 37.1
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 1.1e-11 73.6 127 37.0
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.1e-11 73.6 133 37.6
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 1.1e-11 73.6 126 37.3
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.4e-11 73.2 127 37.0
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 1.9e-11 72.8 127 37.0
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 1.9e-11 72.8 127 43.3
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 1.9e-11 72.8 126 39.7
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 1.9e-11 72.8 114 41.2
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 2.4e-11 72.4 124 39.5
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 2.4e-11 72.4 125 37.6
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 2.4e-11 72.4 129 36.4
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.2e-11 72.0 134 36.6
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 3.2e-11 72.0 131 37.4
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 3.2e-11 72.0 127 37.8
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 3.2e-11 72.0 130 36.2
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 4.2e-11 71.6 127 37.0
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 4.2e-11 71.6 127 37.0
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 4.2e-11 71.6 64 53.1
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.2e-11 71.6 133 36.1
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 4.2e-11 71.6 133 35.3
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 4.2e-11 71.6 125 38.4
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 5.4e-11 71.2 139 38.8
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 5.4e-11 71.2 129 35.7
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 7.1e-11 70.9 125 40.0
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 7.1e-11 70.9 127 37.0
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 7.1e-11 70.9 127 37.0
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 7.1e-11 70.9 127 37.0
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 7.1e-11 70.9 145 34.5
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 7.1e-11 70.9 127 37.0
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 7.1e-11 70.9 127 37.0
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 7.1e-11 70.9 129 34.9
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 7.1e-11 70.9 125 36.0
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 9.3e-11 70.5 129 36.4
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 9.3e-11 70.5 129 36.4
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 9.3e-11 70.5 129 36.4
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 9.3e-11 70.5 113 39.8
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 9.3e-11 70.5 121 38.0
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 9.3e-11 70.5 141 36.9
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 9.3e-11 70.5 123 41.5
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 1.2e-10 70.1 129 36.4
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 1.2e-10 70.1 130 35.4
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.2e-10 70.1 127 36.2
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 1.6e-10 69.7 132 34.1
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 1.6e-10 69.7 129 35.7
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 1.6e-10 69.7 68 47.1
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 1.6e-10 69.7 129 34.9
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 2.1e-10 69.3 127 36.2
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 2.7e-10 68.9 180 30.6
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 2.7e-10 68.9 127 36.2
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 2.7e-10 68.9 136 39.7
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 2.7e-10 68.9 120 36.7
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 3.5e-10 68.6 127 35.4
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 3.5e-10 68.6 127 35.4
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 3.5e-10 68.6 128 35.9
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 3.5e-10 68.6 131 38.9
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 4.6e-10 68.2 78 42.3
BcaC06g33329 Brassica carinata HOM05D003805 ORTHO05D004300 6.0e-10 67.8 135 35.6
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 6.0e-10 67.8 127 35.4
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 6.0e-10 67.8 127 35.4
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 6.0e-10 67.8 121 38.0
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 6.0e-10 67.8 125 36.8
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 7.8e-10 67.4 127 35.4
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 7.8e-10 67.4 127 35.4
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.0e-09 67.0 126 34.9
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 1.0e-09 67.0 124 34.7
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.3e-09 66.6 113 40.7
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 1.7e-09 66.2 134 35.1
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 1.7e-09 66.2 134 35.1
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 1.7e-09 66.2 127 35.4
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 1.7e-09 66.2 134 35.1
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 1.7e-09 66.2 127 35.4
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.7e-09 66.2 127 37.8
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 1.7e-09 66.2 52 55.8
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 1.7e-09 66.2 113 40.7
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 3.0e-09 65.5 127 34.6
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 3.9e-09 65.1 117 36.8
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 3.9e-09 65.1 80 41.2
BcaC06g33330 Brassica carinata HOM05D003805 ORTHO05D004300 5.1e-09 64.7 150 41.3
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 5.1e-09 64.7 108 42.6
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 6.6e-09 64.3 109 40.4
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 8.7e-09 63.9 104 42.3
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 4.3e-08 61.6 124 35.5
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 9.6e-08 60.5 128 35.2
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 9.6e-08 60.5 120 36.7
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.3e-07 60.1 114 36.8
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 1.6e-07 59.7 113 37.2
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 2.1e-07 59.3 130 37.7
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 2.1e-07 59.3 116 35.3
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.8e-07 58.9 126 35.7
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 4.8e-07 58.2 130 37.7
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.1e-06 57.0 78 41.0
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.4e-06 56.6 56 46.4
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.8e-06 56.2 104 41.3
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.1e-06 55.5 116 36.2
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 4.0e-06 55.1 115 36.5
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.9e-06 54.3 89 32.6
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 9.0e-06 53.9 102 37.3


User provided reference genes

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