Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 9.2e-251 869.8 443 100.0
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 6.6e-241 837.0 447 97.1
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 8.6e-233 810.1 448 92.9
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 3.1e-230 801.6 446 93.0
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 6.8e-230 800.4 443 90.5
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 4.9e-228 794.3 447 90.4
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 2.3e-217 758.8 447 87.9
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 1.1e-214 750.0 445 87.0
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 1.4e-214 749.6 448 86.8
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 1.8e-214 749.2 448 86.8
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 9.0e-214 746.9 448 86.6
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 9.0e-214 746.9 448 86.6
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 6.2e-207 724.2 441 82.8
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 2.2e-204 715.7 438 82.2
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 1.7e-196 689.5 448 79.2
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.0e-193 680.2 449 78.4
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 3.9e-193 678.3 396 84.6
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 6.7e-193 677.6 426 79.6
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 1.5e-192 676.4 444 77.7
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 2.5e-192 675.6 428 79.0
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 3.3e-192 675.2 425 80.5
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 4.3e-192 674.9 452 76.8
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 9.6e-192 673.7 449 78.0
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 9.6e-192 673.7 450 78.0
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 1.6e-191 672.9 395 85.1
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 1.6e-191 672.9 395 85.1
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 1.6e-191 672.9 425 80.2
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 2.8e-191 672.2 443 76.3
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 2.8e-191 672.2 429 78.8
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 3.7e-191 671.8 398 84.2
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 1.1e-190 670.2 432 78.5
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 1.4e-190 669.8 443 77.4
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 2.4e-190 669.1 402 81.6
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 6.9e-190 667.5 368 88.0
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 9.0e-190 667.2 396 82.3
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 9.0e-190 667.2 398 82.9
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 1.5e-189 666.4 423 79.4
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 2.0e-189 666.0 393 83.2
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 3.4e-189 665.2 413 80.4
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 3.4e-189 665.2 446 77.1
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 5.8e-189 664.5 395 83.3
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 5.8e-189 664.5 423 79.4
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 1.0e-188 663.7 451 75.2
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 1.3e-188 663.3 389 83.5
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 1.3e-188 663.3 448 77.0
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 1.3e-188 663.3 412 80.3
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 2.2e-188 662.5 449 75.5
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 2.2e-188 662.5 392 83.7
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 2.2e-188 662.5 455 75.4
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 2.9e-188 662.1 423 78.5
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 2.9e-188 662.1 396 81.6
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 2.9e-188 662.1 395 82.3
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 3.8e-188 661.8 433 76.9
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 3.8e-188 661.8 444 76.6
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 6.5e-188 661.0 437 76.7
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 8.4e-188 660.6 423 78.7
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.1e-187 660.2 423 78.5
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 1.4e-187 659.8 396 82.8
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 1.4e-187 659.8 446 75.8
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 1.4e-187 659.8 366 88.0
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 5.5e-187 657.9 419 78.3
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 5.5e-187 657.9 425 78.8
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 5.5e-187 657.9 432 77.5
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 7.1e-187 657.5 442 75.6
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 1.6e-186 656.4 428 77.8
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 1.6e-186 656.4 443 76.1
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.7e-186 655.6 429 76.9
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.5e-186 655.2 391 82.1
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 3.5e-186 655.2 445 76.2
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 4.6e-186 654.8 407 79.4
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 6.0e-186 654.4 438 76.7
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 6.0e-186 654.4 446 75.3
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 6.0e-186 654.4 446 75.6
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 1.3e-185 653.3 391 81.6
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 1.3e-185 653.3 429 78.1
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 2.3e-185 652.5 447 75.4
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.0e-185 652.1 391 82.1
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 3.9e-185 651.7 388 83.0
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 5.1e-185 651.4 390 81.3
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 6.7e-185 651.0 391 83.1
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 6.7e-185 651.0 439 75.4
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 8.7e-185 650.6 440 75.2
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 3.3e-184 648.7 391 83.1
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 5.7e-184 647.9 409 80.2
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 7.4e-184 647.5 392 82.1
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 1.6e-183 646.4 391 82.4
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 2.2e-183 646.0 387 80.6
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.8e-183 645.6 441 74.8
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 4.8e-183 644.8 437 76.4
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 1.4e-182 643.3 453 72.0
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 5.9e-181 637.9 379 83.1
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 7.7e-181 637.5 443 74.7
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 7.7e-181 637.5 385 82.9
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 1.0e-180 637.1 410 77.1
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 1.3e-180 636.7 397 79.8
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 6.5e-180 634.4 401 78.6
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 1.9e-179 632.9 474 69.4
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 1.6e-178 629.8 446 74.0
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 1.0e-177 627.1 368 83.4
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 9.1e-174 614.0 387 77.8
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 5.9e-173 611.3 386 76.4
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 1.1e-171 607.1 386 75.9
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 8.8e-169 597.4 443 71.6
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 7.4e-168 594.3 328 88.4
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 2.4e-166 589.3 387 73.6
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 1.7e-164 583.2 386 73.8
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 1.0e-161 573.9 364 75.5
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 4.5e-157 558.5 372 73.7
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 6.5e-156 554.7 407 71.3
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 1.9e-155 553.1 379 74.7
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.7e-154 549.3 438 67.8
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 3.0e-153 545.8 386 68.7
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 5.5e-147 525.0 287 88.9
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 6.1e-146 521.5 371 68.2
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 3.1e-142 509.2 503 57.5
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 5.5e-139 498.4 397 62.2
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 9.5e-139 497.7 287 83.6
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 5.6e-131 471.9 363 63.9
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 4.0e-129 465.7 367 67.0
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 3.4e-128 462.6 332 72.6
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 1.3e-127 460.7 329 73.6
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 1.0e-116 424.5 233 88.4
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.0e-116 422.9 295 70.8
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.5e-107 394.0 442 53.4
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.6e-106 389.4 315 64.1
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.2e-94 349.7 224 72.8
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.5e-85 319.7 256 65.6
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 2.4e-81 307.0 205 71.2
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 3.5e-77 293.1 299 48.2
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 2.6e-72 276.9 273 57.1
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 2.2e-71 273.9 246 58.9
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 1.6e-69 267.7 161 81.4
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 4.3e-67 259.6 359 43.2
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 2.5e-54 217.2 336 42.6
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 2.1e-53 214.2 192 60.9
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 1.4e-49 201.4 147 69.4
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 1.2e-45 188.3 184 58.7
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 4.4e-43 179.9 113 76.1
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 1.0e-28 132.1 77 81.8
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.7e-26 124.8 83 69.9
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.7e-26 124.8 83 69.9
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 2.7e-24 117.5 129 51.9
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 2.7e-24 117.5 129 51.9
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 9.5e-22 109.0 73 71.2
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 4.0e-20 103.6 113 51.3
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 4.4e-19 100.1 69 68.1
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 5.0e-15 86.7 129 43.4
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 7.0e-09 66.2 37 75.7


User provided reference genes

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