Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 1.8e-226 788.9 394 100.0
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 3.3e-212 741.5 395 93.9
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 9.5e-199 696.8 395 89.4
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 5.9e-193 677.6 395 86.3
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 2.9e-192 675.2 396 86.9
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 7.3e-175 617.5 399 81.7
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.2e-169 600.1 393 79.1
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 9.3e-154 547.4 400 76.5
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 4.5e-148 528.5 398 74.4
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 8.4e-147 524.2 399 73.7
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 1.1e-146 523.9 399 73.9
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 3.2e-146 522.3 401 73.8
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 4.2e-146 521.9 405 72.3
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 1.3e-139 500.4 389 69.4
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 3.7e-134 482.3 395 61.3
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.4e-133 480.3 393 62.1
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 5.8e-132 474.9 397 61.2
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 2.2e-131 473.0 396 63.1
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 2.2e-131 473.0 403 60.5
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 2.9e-131 472.6 393 60.8
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 2.9e-131 472.6 394 60.2
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 3.8e-131 472.2 394 61.2
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 6.5e-131 471.5 390 61.0
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 1.9e-130 469.9 401 60.1
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 5.5e-130 468.4 397 63.0
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 7.1e-130 468.0 395 61.5
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 7.1e-130 468.0 396 59.8
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 3.5e-129 465.7 393 61.8
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 3.5e-129 465.7 395 60.8
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 3.9e-128 462.2 393 61.8
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 1.9e-127 459.9 394 59.9
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 3.3e-127 459.1 399 59.4
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.6e-126 456.8 393 59.5
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 4.8e-126 455.3 396 58.8
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 2.4e-125 453.0 405 58.3
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 4.1e-125 452.2 394 58.9
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 9.0e-125 451.1 399 58.6
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.2e-124 450.7 399 58.6
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 1.2e-124 450.7 396 60.1
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 1.5e-124 450.3 397 58.7
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 2.6e-124 449.5 391 59.1
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 5.9e-124 448.4 393 58.8
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 1.0e-123 447.6 396 58.6
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 1.0e-123 447.6 398 58.3
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 1.3e-123 447.2 404 59.2
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.7e-123 446.8 395 60.0
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.2e-123 446.4 399 58.1
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.9e-123 446.0 399 57.9
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.9e-123 446.0 399 57.9
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 3.8e-123 445.7 399 58.6
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 3.8e-123 445.7 396 58.6
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 6.5e-123 444.9 395 59.5
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 8.5e-123 444.5 399 58.1
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.1e-122 444.1 396 60.1
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.4e-122 443.7 270 83.7
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 1.4e-122 443.7 399 59.6
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 2.5e-122 443.0 399 59.9
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 3.2e-122 442.6 396 59.1
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 4.2e-122 442.2 445 54.4
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 4.2e-122 442.2 397 58.9
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 5.5e-122 441.8 397 58.2
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 7.2e-122 441.4 427 55.3
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 7.2e-122 441.4 393 58.5
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 9.3e-122 441.0 395 59.5
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 2.1e-121 439.9 395 57.7
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 2.7e-121 439.5 395 58.5
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 2.7e-121 439.5 393 58.8
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 4.6e-121 438.7 402 58.2
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.8e-120 436.8 397 58.4
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.0e-120 436.0 395 58.5
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 3.0e-120 436.0 393 58.3
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 3.0e-120 436.0 393 58.3
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 5.1e-120 435.3 396 57.3
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 2.5e-119 433.0 394 57.4
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 4.3e-119 432.2 397 56.4
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 4.3e-119 432.2 389 58.9
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 2.8e-118 429.5 409 56.2
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 3.7e-118 429.1 395 56.2
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.8e-117 426.8 395 56.2
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 4.1e-117 425.6 407 55.5
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 4.1e-117 425.6 393 56.5
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 6.9e-117 424.9 398 57.8
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 1.2e-116 424.1 396 56.8
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 3.8e-115 419.1 385 56.6
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 8.5e-115 417.9 389 56.0
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 1.9e-114 416.8 401 56.1
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 3.2e-114 416.0 398 56.8
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 8.8e-112 407.9 401 55.1
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 9.7e-111 404.4 455 50.3
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 9.7e-111 404.4 398 54.8
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 2.8e-110 402.9 413 53.8
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 1.7e-107 393.7 401 54.9
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 4.2e-106 389.0 374 55.6
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.2e-105 387.5 397 52.9
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 3.6e-105 386.0 384 55.2
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 1.0e-104 384.4 421 49.4
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 6.7e-104 381.7 394 52.5
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 2.6e-103 379.8 390 51.8
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 4.8e-102 375.6 409 50.6
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 1.2e-100 370.9 411 48.4
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 8.5e-99 364.8 320 60.6
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 2.7e-97 359.8 396 47.7
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.2e-92 344.4 393 48.1
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 2.7e-92 343.2 291 59.8
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 7.2e-90 335.1 469 43.3
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 6.1e-89 332.0 299 56.2
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 1.0e-88 331.3 399 49.4
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 3.1e-85 319.7 464 42.0
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 3.6e-81 306.2 406 43.8
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 6.1e-81 305.4 351 49.6
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 2.7e-76 290.0 424 41.7
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 1.1e-74 284.6 254 58.7
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 2.5e-74 283.5 366 46.2
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 1.2e-71 274.6 362 45.6
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 4.4e-71 272.7 402 44.0
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 9.8e-71 271.6 409 43.3
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.7e-70 270.8 401 41.4
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 9.2e-69 265.0 442 38.9
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 2.0e-68 263.8 399 40.6
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 3.5e-68 263.1 462 35.9
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 7.8e-60 235.3 218 56.4
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 9.9e-55 218.4 319 43.6
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 4.6e-52 209.5 166 60.2
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 6.6e-51 205.7 274 40.1
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 6.2e-49 199.1 180 56.1
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 8.1e-41 172.2 192 50.0
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 3.8e-38 163.3 174 48.3
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 1.4e-37 161.4 155 54.8
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 1.6e-36 157.9 167 49.1
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 3.3e-34 150.2 175 50.9
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 3.3e-34 150.2 110 63.6
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 5.3e-32 142.9 330 32.7
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 1.1e-24 118.6 184 42.4
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 2.0e-23 114.4 88 59.1
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.3e-19 100.9 53 90.6
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 7.4e-18 95.9 105 51.4
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 1.3e-17 95.1 94 54.3
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 2.1e-17 94.4 142 38.7
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 6.9e-16 89.4 114 44.7
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 1.2e-15 88.6 112 51.8
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 1.2e-15 88.6 112 51.8
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 7.1e-13 79.3 54 68.5
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 7.1e-13 79.3 54 68.5
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 3.5e-12 77.0 397 23.4
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 8.7e-11 72.4 158 36.7
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 2.4e-08 64.3 81 40.7


User provided reference genes

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