Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G65880 Arabidopsis thaliana HOM05D008250 ORTHO05D010361 3.4e-26 120.9 63 100.0
AL8G43594 Arabidopsis lyrata HOM05D008250 ORTHO05D010361 6.7e-22 106.7 61 93.4
Carub.0008s2677 Capsella rubella HOM05D008250 ORTHO05D010361 6.7e-22 106.7 62 90.3
BcaC01g02825 Brassica carinata HOM05D008250 ORTHO05D010361 3.8e-17 90.9 58 81.0
BraA06t26203Z Brassica rapa HOM05D008250 ORTHO05D010361 3.8e-17 90.9 58 81.0
BcaB02g09904 Brassica carinata HOM05D008250 ORTHO05D010361 5.0e-17 90.5 58 79.3
C03p59760 Brassica napus HOM05D008250 ORTHO05D010361 1.1e-16 89.4 58 79.3
C03p59770 Brassica napus HOM05D008250 ORTHO05D010361 1.1e-16 89.4 58 79.3
BolC3t18239H Brassica oleracea HOM05D008250 ORTHO05D010361 1.1e-16 89.4 58 79.3
BolC3t18240H Brassica oleracea HOM05D008250 ORTHO05D010361 1.1e-16 89.4 58 79.3
Thhalv10005252m.g Eutrema salsugineum HOM05D008250 ORTHO05D010361 9.3e-16 86.3 58 75.9
CARHR279880 Cardamine hirsuta HOM05D008250 ORTHO05D010361 1.2e-15 85.9 64 76.6
CiPaw.01G002500 Carya illinoinensis HOM05D008250 ORTHO05D010361 7.9e-15 83.2 50 82.0
Hma1.2p1_1760F.1_g301220 Hydrangea macrophylla HOM05D008250 ORTHO05D010361 3.9e-14 80.9 63 68.3
Thecc.01G075500 Theobroma cacao HOM05D008250 ORTHO05D010361 5.1e-14 80.5 50 74.0
COL.COLO4_11607 Corchorus olitorius HOM05D008250 ORTHO05D010361 6.7e-14 80.1 63 63.5
Lsat_1_v5_gn_4_159680 Lactuca sativa HOM05D008250 ORTHO05D010361 6.7e-14 80.1 63 65.1
Migut.H00327 Erythranthe guttata HOM05D008250 ORTHO05D010361 1.1e-13 79.3 63 65.1
HanXRQChr09g0255361 Helianthus annuus HOM05D008250 ORTHO05D010361 1.1e-13 79.3 45 80.0
Gohir.A12G078200 Gossypium hirsutum HOM05D008250 ORTHO05D010361 1.9e-13 78.6 50 72.0
Potri.007G006700 Populus trichocarpa HOM05D008250 ORTHO05D010361 1.9e-13 78.6 63 65.1
Gohir.D12G076400 Gossypium hirsutum HOM05D008250 ORTHO05D010361 2.5e-13 78.2 50 70.0
Gorai.008G085000 Gossypium raimondii HOM05D008250 ORTHO05D010361 2.5e-13 78.2 50 70.0
Manes.12G117000 Manihot esculenta HOM05D008250 ORTHO05D010361 3.3e-13 77.8 63 65.1
ClCG02G012200 Citrullus lanatus HOM05D008250 ORTHO05D010361 4.3e-13 77.4 57 70.2
TWI74G1530 Tripterygium wilfordii HOM05D008250 ORTHO05D010361 7.4e-13 76.6 50 76.0
GSVIVG01002948001 Vitis vinifera HOM05D008250 ORTHO05D010361 7.4e-13 76.6 61 65.6
GSVIVG01004436001 Vitis vinifera HOM05D008250 ORTHO05D010361 7.4e-13 76.6 61 65.6
Sc03g0002500 Simmondsia chinensis HOM05D008250 ORTHO05D010361 1.3e-12 75.9 63 60.3
Actinidia16414 Actinidia chinensis HOM05D008250 ORTHO05D010361 1.6e-12 75.5 61 62.3
Phvul.003G233500 Phaseolus vulgaris HOM05D008250 ORTHO05D010361 1.6e-12 75.5 63 61.9
Ciclev10026916m.g Citrus clementina HOM05D008250 ORTHO05D010361 2.2e-12 75.1 63 61.9
Aqoxy6G02462 Aquilegia oxysepala HOM05D008250 ORTHO05D010361 3.7e-12 74.3 50 80.0
Nn6g34516 Nelumbo nucifera HOM05D008250 ORTHO05D010361 3.7e-12 74.3 61 63.9
Atru.chr3.1053 Acer truncatum HOM05D008250 ORTHO05D010361 8.2e-12 73.2 63 61.9
Prupe.6G217600 Prunus persica HOM05D008250 ORTHO05D010361 1.8e-11 72.0 38 86.8
Glyma.05G107700 Glycine max HOM05D008250 ORTHO05D010361 3.1e-11 71.2 38 84.2
Glyma.17G159100 Glycine max HOM05D008250 ORTHO05D010361 4.1e-11 70.9 63 61.9
MD02G1189100 Malus domestica HOM05D008250 ORTHO05D010361 4.1e-11 70.9 50 74.0
Sed0009961 Sechium edule HOM05D008250 ORTHO05D010361 9.1e-11 69.7 57 61.4
Solyc02g092130.2 Solanum lycopersicum HOM05D008250 ORTHO05D010361 1.2e-10 69.3 56 67.9
Potri.014G006850 Populus trichocarpa HOM05D008250 ORTHO05D010361 2.6e-10 68.2 43 76.7
Lj4g0012638 Lotus japonicus HOM05D008250 ORTHO05D010361 3.4e-10 67.8 37 81.1
PGSC0003DMG400021408 Solanum tuberosum HOM05D008250 ORTHO05D010361 3.4e-10 67.8 56 66.1
arahy.Tifrunner.gnm1.ann1.IKZ63P Arachis hypogaea HOM05D008250 ORTHO05D010361 4.5e-10 67.4 34 88.2
arahy.Tifrunner.gnm1.ann1.L5XXFX Arachis hypogaea HOM05D008250 ORTHO05D010361 4.5e-10 67.4 34 88.2
RcHm_v2.0_Chr2g0108561 Rosa chinensis HOM05D008250 ORTHO05D010361 4.5e-10 67.4 61 55.7
Lalb_Chr05g0230301 Lupinus albus HOM05D008250 ORTHO05D010361 1.0e-09 66.2 63 55.6
TPR.G3717 Trifolium pratense HOM05D008250 ORTHO05D010361 1.3e-09 65.9 37 75.7
Medtr4g097410 Medicago truncatula HOM05D008250 ORTHO05D010361 2.2e-09 65.1 62 56.5
SEGI_25339 Sequoiadendron giganteum HOM05D008250 ORTHO05D010361 2.9e-09 64.7 57 56.1
Psat4g080920 Pisum sativum HOM05D008250 ORTHO05D010361 5.0e-09 63.9 62 53.2
CDE02G1785 Ceratophyllum demersum HOM05D008250 ORTHO05D010361 8.5e-09 63.2 43 67.4
CsaV3_2G016360 Cucumis sativus L. HOM05D008250 ORTHO05D010361 1.4e-08 62.4 39 79.5
Aa31LG1G16230 Aethionema arabicum HOM05D008250 ORTHO05D010361 1.6e-07 58.9 41 70.7
A06p32730 Brassica napus HOM05D008250 ORTHO05D010361 3.6e-07 57.8 40 75.0
Os03g0675700 Oryza sativa ssp. japonica HOM05D008250 ORTHO05D010361 4.6e-07 57.4 43 60.5
AagrBONN_evm.TU.Sc2ySwM_362.1884 Anthoceros agrestis HOM05D063975 ORTHO05D010361 3.0e-06 54.7 63 49.2
CSS0002791 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 3.0e-06 54.7 45 64.4
CSS0014718 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 3.0e-06 54.7 45 64.4
Rhsim08G0091900 Rhododendron simsii HOM05D008250 ORTHO05D010361 6.7e-06 53.5 45 60.0


User provided reference genes

Program Settings