Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 3.4e-147 525.0 276 100.0
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 1.9e-137 492.7 268 94.0
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 3.1e-124 448.7 271 85.2
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 2.0e-123 446.0 271 84.9
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 8.0e-120 434.1 277 82.3
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 1.8e-116 422.9 273 79.9
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 2.7e-115 419.1 273 78.8
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 3.5e-115 418.7 269 81.4
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 7.8e-115 417.5 271 80.1
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 1.3e-114 416.8 270 80.0
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 2.3e-114 416.0 274 79.2
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 2.3e-114 416.0 274 79.2
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 1.9e-113 412.9 271 79.0
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 1.8e-108 396.4 272 76.8
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 1.1e-95 354.0 268 69.4
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 3.3e-89 332.4 204 74.0
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 8.1e-88 327.8 262 64.1
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 1.4e-87 327.0 202 73.3
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 4.0e-87 325.5 273 60.1
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.0e-87 325.5 258 65.1
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 8.9e-87 324.3 272 62.1
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 2.0e-86 323.2 274 61.3
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 2.6e-86 322.8 256 62.5
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 3.4e-86 322.4 211 71.1
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 9.9e-86 320.9 210 70.5
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 9.9e-86 320.9 216 67.6
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 9.9e-86 320.9 209 72.7
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 1.3e-85 320.5 213 70.0
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 1.3e-85 320.5 268 62.3
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 1.3e-85 320.5 260 61.5
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 1.7e-85 320.1 264 63.6
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 1.7e-85 320.1 211 69.2
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 2.2e-85 319.7 206 72.8
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 3.8e-85 318.9 258 61.2
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 3.8e-85 318.9 249 63.1
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 3.8e-85 318.9 266 60.2
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 4.9e-85 318.5 258 63.6
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.9e-85 318.5 258 63.6
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 4.9e-85 318.5 203 71.4
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 4.9e-85 318.5 203 71.9
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 4.9e-85 318.5 200 73.5
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 4.9e-85 318.5 200 72.5
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 6.4e-85 318.2 203 71.4
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 8.4e-85 317.8 274 60.9
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 1.1e-84 317.4 209 71.8
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.4e-84 317.0 261 62.8
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.4e-84 317.0 260 65.0
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 1.4e-84 317.0 198 74.7
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.4e-84 317.0 275 59.3
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 1.4e-84 317.0 206 70.9
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 1.9e-84 316.6 276 59.1
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.9e-84 316.6 200 73.0
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 2.4e-84 316.2 254 62.6
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 3.2e-84 315.8 264 60.6
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 4.1e-84 315.5 257 58.0
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 5.4e-84 315.1 209 71.8
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 7.1e-84 314.7 211 70.6
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 9.2e-84 314.3 203 72.4
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 1.2e-83 313.9 250 62.0
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 2.7e-83 312.8 263 62.4
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 3.5e-83 312.4 248 62.1
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 4.6e-83 312.0 205 71.7
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 4.6e-83 312.0 241 63.9
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 6.0e-83 311.6 256 61.7
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 7.8e-83 311.2 249 61.8
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 7.8e-83 311.2 200 71.5
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 1.0e-82 310.8 207 72.0
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.3e-82 310.5 197 71.6
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.7e-82 310.1 195 72.8
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 3.0e-82 309.3 197 71.1
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 1.1e-81 307.4 207 70.0
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 1.5e-81 307.0 266 59.0
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 5.6e-81 305.1 192 71.4
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 9.6e-81 304.3 184 75.0
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 9.6e-81 304.3 190 73.7
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 9.6e-81 304.3 255 62.0
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 1.2e-80 303.9 209 69.9
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 1.6e-80 303.5 198 71.7
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.6e-80 303.5 192 70.8
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 2.1e-80 303.1 248 60.5
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 6.2e-80 301.6 262 59.9
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 8.1e-80 301.2 184 73.9
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 8.1e-80 301.2 263 56.7
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 1.4e-79 300.4 262 59.2
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 1.4e-79 300.4 200 69.5
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 4.0e-79 298.9 187 70.6
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 1.2e-78 297.4 205 67.3
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 2.6e-78 296.2 258 60.1
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 5.8e-78 295.0 254 58.3
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 9.9e-78 294.3 208 67.3
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.3e-77 293.9 198 66.7
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 1.3e-77 293.9 186 69.9
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 4.9e-77 292.0 208 64.4
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 8.4e-77 291.2 187 70.1
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 1.9e-76 290.0 267 56.6
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 2.4e-76 289.7 198 67.2
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 7.1e-76 288.1 190 69.5
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.7e-74 283.5 228 59.6
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 3.0e-74 282.7 176 71.6
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 6.6e-74 281.6 266 56.4
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 1.5e-73 280.4 194 65.5
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 2.5e-73 279.6 195 64.6
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 3.3e-73 279.3 248 57.7
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 4.8e-72 275.4 189 66.7
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 4.0e-71 272.3 199 66.8
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 5.3e-71 271.9 208 63.0
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 5.3e-71 271.9 161 76.4
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.0e-70 270.0 258 57.0
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.7e-69 266.9 160 76.2
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 3.8e-69 265.8 202 59.9
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 5.4e-68 261.9 161 72.7
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 1.6e-67 260.4 207 61.4
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 1.6e-67 260.4 167 70.1
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 4.6e-67 258.8 202 62.4
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 2.3e-66 256.5 161 73.3
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 5.1e-66 255.4 187 63.1
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 1.8e-63 246.9 270 51.9
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 5.5e-60 235.3 267 49.4
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 1.6e-59 233.8 182 53.8
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 3.7e-56 222.6 250 49.2
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 5.8e-54 215.3 148 69.6
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 3.8e-53 212.6 212 48.6
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 6.5e-53 211.8 146 64.4
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 5.3e-47 192.2 127 70.1
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.0e-42 177.9 166 56.6
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 4.1e-39 166.0 102 71.6
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 4.5e-38 162.5 103 68.9
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 6.5e-37 158.7 108 62.0
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 8.8e-34 148.3 97 71.1
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 2.6e-30 136.7 98 67.3
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 1.3e-29 134.4 101 64.4
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.1e-27 125.6 197 37.1
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 8.8e-26 121.7 205 35.6
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 3.3e-25 119.8 185 36.8
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 2.8e-24 116.7 167 39.5
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 6.3e-24 115.5 187 35.3
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.1e-23 114.8 101 55.4
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 1.4e-23 114.4 202 35.6
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 1.8e-23 114.0 187 36.4
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 1.8e-23 114.0 186 36.0
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 2.4e-23 113.6 186 36.0
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 7.0e-23 112.1 216 32.4
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 1.6e-22 110.9 186 34.9
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 1.6e-22 110.9 178 35.4
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 1.6e-22 110.9 208 32.7
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 1.6e-22 110.9 187 35.3
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 2.0e-22 110.5 208 33.7
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 2.6e-22 110.2 191 33.0
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 3.5e-22 109.8 186 33.3
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 7.7e-22 108.6 209 32.5
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 1.3e-21 107.8 266 33.1
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 1.7e-21 107.5 176 37.5
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 2.9e-21 106.7 187 33.7
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 3.8e-21 106.3 186 33.3
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 8.5e-21 105.1 187 33.7
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 1.1e-20 104.8 180 33.9
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 1.5e-20 104.4 186 33.3
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 5.5e-20 102.4 201 33.3
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.6e-19 100.9 68 73.5
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 4.7e-19 99.4 158 41.8
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 1.5e-17 94.4 132 41.7
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 7.5e-17 92.0 128 40.6
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 1.7e-16 90.9 73 61.6
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 2.2e-16 90.5 169 33.7
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 2.2e-16 90.5 140 37.9
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 4.8e-16 89.4 170 32.4
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 2.0e-14 84.0 216 30.6
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 2.7e-14 83.6 54 75.9
TWI74G0989 Tripterygium wilfordii HOM05D007024 ORTHO05D008865 3.5e-14 83.2 120 37.5
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 5.9e-14 82.4 187 30.5
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 6.5e-13 79.0 145 33.8
CBR_g9017 Chara braunii HOM05D001161 ORTHO05D000497 7.2e-12 75.5 167 27.5
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 1.2e-11 74.7 131 33.6
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 2.3e-10 70.5 135 32.6
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 3.0e-10 70.1 230 23.9
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 5.7e-09 65.9 41 61.0
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 7.5e-09 65.5 125 33.6
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 1.3e-08 64.7 50 68.0
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 1.7e-08 64.3 110 34.5
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.4e-07 61.2 49 57.1
SEGI_25621 Sequoiadendron giganteum HOM05D007024 ORTHO05D008865 1.4e-07 61.2 85 38.8
GSVIVG01007445001 Vitis vinifera HOM05D004917 ORTHO05D005954 7.7e-06 55.5 50 52.0


User provided reference genes

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