Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 6.7e-98 361.3 280 100.0
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 4.5e-86 322.0 280 93.6
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 5.9e-86 321.6 280 91.4
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 3.0e-82 309.3 280 91.4
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 8.8e-82 307.8 280 89.6
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 2.1e-75 286.6 280 85.7
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 2.7e-75 286.2 280 85.7
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 2.7e-75 286.2 280 85.4
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 2.7e-75 286.2 280 85.7
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 2.7e-75 286.2 280 85.4
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 6.7e-74 281.6 270 88.5
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 1.7e-72 276.9 280 83.2
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 2.4e-71 273.1 280 86.4
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 5.3e-71 271.9 281 84.7
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 1.0e-69 267.7 284 83.8
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.3e-69 267.3 275 85.1
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 3.8e-69 265.8 279 84.6
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 8.5e-69 264.6 275 85.5
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 5.5e-68 261.9 280 82.1
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 1.6e-67 260.4 282 83.7
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 1.6e-67 260.4 282 83.7
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 2.7e-67 259.6 281 82.9
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 3.6e-67 259.2 281 82.9
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 4.7e-67 258.8 282 83.3
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 4.7e-67 258.8 282 83.3
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 6.1e-67 258.5 282 83.0
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 8.0e-67 258.1 281 82.6
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 2.3e-66 256.5 281 82.2
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 2.3e-66 256.5 282 82.6
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 5.2e-66 255.4 270 85.2
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 8.5e-61 238.0 267 82.0
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.9e-60 236.9 267 82.4
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 3.2e-60 236.1 269 79.6
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 9.4e-60 234.6 274 71.5
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.7e-59 232.3 268 82.1
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.1e-59 231.9 267 82.0
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 6.1e-59 231.9 267 82.0
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 6.1e-59 231.9 273 78.0
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 1.0e-58 231.1 265 81.5
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 1.4e-58 230.7 256 81.2
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 6.8e-58 228.4 267 80.5
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 8.8e-58 228.0 269 79.2
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 8.8e-58 228.0 273 78.0
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 8.8e-58 228.0 273 78.0
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 8.8e-58 228.0 265 80.8
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 8.8e-58 228.0 265 80.8
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 1.5e-57 227.3 280 64.3
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.5e-57 227.3 273 78.0
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 1.5e-57 227.3 267 78.3
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 2.0e-57 226.9 260 80.8
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.4e-57 226.1 271 77.9
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.4e-57 226.1 265 80.8
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 3.4e-57 226.1 266 77.8
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 4.4e-57 225.7 264 79.5
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 1.3e-56 224.2 273 76.9
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 1.7e-56 223.8 248 83.1
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.2e-56 223.4 268 78.4
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 2.2e-56 223.4 266 78.9
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.8e-56 223.0 268 78.0
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.8e-56 223.0 270 79.3
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 3.7e-56 222.6 268 77.6
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 4.9e-56 222.2 265 78.5
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 6.3e-56 221.9 266 76.7
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 8.3e-56 221.5 267 77.5
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 8.3e-56 221.5 267 77.5
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.1e-55 221.1 266 79.3
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.1e-55 221.1 270 78.1
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 1.8e-55 220.3 273 76.6
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 1.8e-55 220.3 263 77.9
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 3.1e-55 219.5 264 78.0
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 3.1e-55 219.5 266 77.8
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 7.0e-55 218.4 276 76.4
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 1.6e-54 217.2 251 80.1
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 1.6e-54 217.2 251 80.1
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 2.0e-54 216.9 269 78.8
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 7.7e-54 214.9 264 73.9
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 7.7e-54 214.9 265 77.0
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.0e-53 214.5 270 76.3
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.0e-53 214.5 270 76.3
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 1.0e-53 214.5 262 77.1
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.0e-53 214.5 251 80.1
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 1.3e-53 214.2 249 82.7
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 1.3e-53 214.2 264 72.3
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 1.7e-53 213.8 252 79.8
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 1.7e-53 213.8 268 76.1
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 2.3e-53 213.4 265 76.6
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 2.9e-53 213.0 249 79.5
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 3.8e-53 212.6 267 69.7
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 5.0e-53 212.2 267 75.3
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 6.6e-53 211.8 264 76.5
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 1.9e-52 210.3 267 71.5
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 2.5e-52 209.9 269 74.3
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 2.5e-52 209.9 251 77.7
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 4.2e-52 209.1 270 75.2
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 2.8e-51 206.5 275 74.5
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 3.6e-51 206.1 252 75.4
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 4.7e-51 205.7 269 74.3
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 4.7e-51 205.7 251 80.1
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 4.7e-51 205.7 268 75.4
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 8.0e-51 204.9 262 76.0
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 8.0e-51 204.9 243 81.5
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 1.4e-50 204.1 249 77.1
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 1.8e-50 203.8 272 74.3
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 1.8e-50 203.8 269 76.2
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 6.8e-50 201.8 252 77.4
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 6.8e-50 201.8 253 76.7
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 2.0e-49 200.3 262 74.0
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 9.8e-49 198.0 273 48.4
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 1.3e-48 197.6 283 71.4
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 1.7e-48 197.2 252 76.2
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 2.2e-48 196.8 249 77.1
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 2.2e-48 196.8 250 77.2
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 3.7e-48 196.1 270 73.3
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 1.4e-47 194.1 264 71.6
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 1.4e-47 194.1 264 71.6
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 1.4e-47 194.1 266 73.7
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.8e-47 193.7 268 73.1
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 3.2e-47 193.0 268 73.1
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 2.0e-46 190.3 258 75.2
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 5.9e-46 188.7 273 73.6
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 5.9e-46 188.7 229 83.8
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 3.9e-45 186.0 244 78.3
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 5.0e-45 185.7 223 84.3
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 1.1e-44 184.5 268 64.9
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 3.3e-44 183.0 282 69.9
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 1.4e-42 177.6 229 80.8
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 1.8e-42 177.2 237 80.2
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 3.1e-42 176.4 269 68.8
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 5.2e-42 175.6 278 39.6
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 6.8e-42 175.3 251 72.1
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.5e-41 174.1 231 79.2
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 2.0e-41 173.7 253 68.4
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.3e-40 171.0 240 74.2
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.3e-40 171.0 270 71.1
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 1.7e-40 170.6 211 85.3
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 2.9e-40 169.9 249 75.1
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 2.9e-40 169.9 251 72.9
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.7e-40 169.5 235 77.9
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 1.9e-39 167.2 258 69.8
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 4.1e-39 166.0 258 69.8
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 4.0e-34 149.4 247 72.5
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 5.2e-34 149.1 214 79.9
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 3.2e-31 139.8 208 79.3
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 7.1e-31 138.7 94 71.3
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.7e-29 134.0 216 77.3
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 6.6e-29 132.1 87 75.9
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 2.3e-26 123.6 87 69.0
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 2.3e-26 123.6 96 64.6
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 7.1e-23 112.1 265 51.7
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.7e-22 110.2 272 61.4
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 3.5e-22 109.8 276 60.5
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 3.0e-21 106.7 250 58.0
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 8.6e-21 105.1 87 60.9
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 4.7e-19 99.4 84 57.1
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 3.1e-18 96.7 83 59.0
BcaB04g20035 Brassica carinata HOM05D004527 ORTHO05D005335 2.2e-16 90.5 61 72.1
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.1e-10 71.6 57 63.2
AUR62008062 Chenopodium quinoa HOM05D000094 ORTHO05D001056 1.9e-07 60.8 97 39.2
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 2.4e-07 60.5 233 58.4
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 3.2e-07 60.1 79 40.5
Aa31LG1G7900 Aethionema arabicum HOM05D000166 ORTHO05D001348 1.6e-06 57.8 107 36.4
RcHm_v2.0_Chr2g0084611 Rosa chinensis HOM05D000094 ORTHO05D001056 2.1e-06 57.4 77 36.4
arahy.Tifrunner.gnm1.ann1.4453MP Arachis hypogaea HOM05D000094 ORTHO05D001056 2.7e-06 57.0 95 35.8
AUR62028640 Chenopodium quinoa HOM05D000094 ORTHO05D001056 3.5e-06 56.6 98 36.7
Manes.01G019000 Manihot esculenta HOM05D000094 ORTHO05D001056 3.5e-06 56.6 76 42.1
arahy.Tifrunner.gnm1.ann1.CS3AAU Arachis hypogaea HOM05D000094 ORTHO05D001056 7.9e-06 55.5 95 35.8
SEGI_31292 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 7.9e-06 55.5 100 38.0


User provided reference genes

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