Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 0.0e+00 1132.1 606 100.0
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 0.0e+00 1088.2 604 95.5
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 1.5e-304 1048.9 609 92.6
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 1.6e-301 1038.9 609 90.5
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 1.3e-295 1019.2 610 90.7
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 2.9e-292 1008.1 610 88.9
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 4.0e-265 917.9 616 82.6
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 4.0e-265 917.9 616 82.6
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 1.3e-258 896.3 617 80.7
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 5.8e-256 887.5 617 80.1
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 6.5e-231 804.3 613 70.6
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 4.2e-230 801.6 617 71.0
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 1.6e-200 703.4 647 67.4
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 1.4e-177 627.1 613 57.9
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 5.9e-176 621.7 611 58.1
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 6.6e-175 618.2 611 57.8
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.5e-174 617.1 613 57.4
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 1.7e-170 603.6 620 54.8
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 1.2e-168 597.4 624 56.1
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 2.3e-167 593.2 614 56.7
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 2.3e-167 593.2 615 56.9
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 3.9e-167 592.4 625 55.7
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 8.1e-165 584.7 619 55.4
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 6.4e-162 575.1 615 55.8
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 1.5e-158 563.9 615 53.5
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 2.5e-158 563.1 611 53.8
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 5.6e-158 562.0 621 53.6
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 8.9e-156 554.7 650 51.7
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 5.8e-155 552.0 620 53.4
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 4.6e-152 542.3 623 52.3
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 7.8e-152 541.6 623 53.3
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 8.6e-151 538.1 635 50.9
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 2.8e-149 533.1 645 52.1
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.4e-148 530.8 620 51.5
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 1.4e-148 530.8 629 51.5
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 4.0e-148 529.3 626 50.8
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 6.8e-148 528.5 613 51.2
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 1.2e-147 527.7 628 50.8
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.4e-147 526.2 575 54.3
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 9.9e-147 524.6 616 50.8
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 2.2e-146 523.5 633 49.1
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 2.9e-146 523.1 624 51.1
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 6.4e-146 521.9 623 53.1
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.4e-145 520.8 622 51.4
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 1.9e-145 520.4 622 51.4
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 7.1e-145 518.5 634 48.9
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.5e-142 510.8 623 50.4
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 4.3e-142 509.2 629 49.8
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 2.1e-141 506.9 620 53.9
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 2.8e-141 506.5 626 50.3
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 3.1e-140 503.1 696 45.5
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 5.8e-139 498.8 571 54.5
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.2e-138 496.9 716 43.7
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 4.9e-138 495.7 619 49.6
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 6.4e-138 495.4 617 48.0
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 6.4e-138 495.4 632 50.3
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 1.6e-136 490.7 716 43.7
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 1.1e-134 484.6 624 47.4
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 1.9e-134 483.8 641 45.9
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 9.6e-134 481.5 622 48.2
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 1.3e-133 481.1 580 53.4
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 4.8e-133 479.2 623 49.3
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 2.4e-132 476.9 626 47.6
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 5.3e-132 475.7 631 47.2
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 6.9e-132 475.3 612 51.0
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 4.5e-131 472.6 673 44.4
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 4.5e-131 472.6 628 46.2
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 4.9e-130 469.2 645 47.6
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 4.9e-130 469.2 588 50.0
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 1.2e-128 464.5 619 49.3
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.5e-126 457.6 590 50.5
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 5.6e-126 455.7 622 48.6
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 3.7e-125 453.0 630 48.4
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 1.4e-124 451.1 675 43.0
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 1.4e-124 451.1 675 43.0
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 1.8e-124 450.7 630 48.3
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 2.4e-124 450.3 508 51.6
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 4.0e-124 449.5 641 47.0
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 2.6e-123 446.8 665 44.2
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 1.3e-122 444.5 646 43.7
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 6.5e-122 442.2 637 44.7
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 6.7e-119 432.2 640 44.1
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 6.7e-119 432.2 605 46.3
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 8.7e-119 431.8 480 51.5
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 2.5e-118 430.3 627 44.3
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 9.6e-118 428.3 644 43.9
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 4.5e-115 419.5 635 44.7
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 3.3e-110 403.3 578 46.5
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 6.9e-108 395.6 648 40.4
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 1.7e-106 391.0 640 43.8
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 1.9e-105 387.5 614 45.1
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 3.2e-105 386.7 619 44.1
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 6.1e-104 382.5 624 43.6
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 3.0e-103 380.2 452 48.0
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 8.2e-101 372.1 612 41.8
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 1.8e-100 370.9 619 41.0
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 6.9e-100 369.0 621 41.7
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 7.9e-96 355.5 416 53.6
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 6.3e-93 345.9 574 39.4
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 5.9e-91 339.3 621 41.7
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 5.3e-84 316.2 546 40.5
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 1.7e-82 311.2 419 44.6
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 3.2e-81 307.0 529 40.3
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 2.2e-74 284.3 332 48.8
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 3.0e-71 273.9 306 52.0
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 4.3e-57 226.9 237 57.0
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 8.0e-56 222.6 176 79.0
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 8.6e-50 202.6 185 68.6
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 4.4e-46 190.3 478 33.3
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 2.9e-45 187.6 145 69.0
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 1.0e-42 179.1 282 39.0
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 2.1e-40 171.4 681 28.8
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 2.3e-39 167.9 131 69.5
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.0e-38 164.9 181 51.9
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 4.9e-37 160.2 275 34.5
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 9.2e-36 156.0 119 68.1
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 7.8e-35 152.9 172 50.0
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.1e-31 141.0 135 56.3
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.6e-30 137.9 183 45.9
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 1.1e-28 132.5 620 27.1
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.9e-28 131.7 282 40.4
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 2.4e-28 131.3 494 27.5
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 2.3e-26 124.8 140 54.3
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 8.7e-26 122.9 110 60.9
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.1e-23 114.4 75 69.3
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 2.9e-21 107.8 72 76.4
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 6.4e-21 106.7 492 25.2
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 2.7e-19 101.3 143 50.3
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 6.0e-19 100.1 603 23.5
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 4.0e-15 87.4 70 60.0
C03p60220 Brassica napus HOM05D055775 ORTHO05D041469 6.9e-15 86.7 182 45.6
BolC3t18284H Brassica oleracea HOM05D055775 ORTHO05D041469 6.9e-15 86.7 182 45.6
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 5.8e-14 83.6 76 65.8
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.9e-12 78.6 133 44.4
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.8e-10 72.0 87 52.9
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 3.9e-10 70.9 69 49.3
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 2.1e-08 65.1 111 37.8
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 1.4e-07 62.4 145 36.6


User provided reference genes

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