Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 0.0e+00 1201.4 644 100.0
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 0.0e+00 1139.4 651 94.5
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 0.0e+00 1087.8 650 89.7
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 1.9e-305 1052.0 646 84.7
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.4e-303 1045.8 646 85.1
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 2.0e-299 1031.9 648 82.7
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 5.0e-290 1000.7 646 81.9
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 8.8e-287 989.9 644 81.7
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 2.0e-283 978.8 651 79.9
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 1.8e-276 955.7 650 79.4
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 7.3e-273 943.7 647 78.1
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 9.0e-231 803.9 655 65.0
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 8.1e-224 780.8 628 64.8
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 1.2e-222 776.9 649 65.9
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 1.7e-221 773.1 637 64.1
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 6.0e-219 764.6 652 62.1
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 1.1e-217 760.4 643 62.8
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 4.3e-217 758.4 652 61.3
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 4.8e-216 755.0 651 61.8
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 2.4e-215 752.7 647 61.2
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 1.2e-214 750.4 656 62.2
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 2.6e-214 749.2 640 61.9
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 5.8e-214 748.0 647 62.1
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 5.8e-214 748.0 650 64.3
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 2.9e-213 745.7 643 61.7
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 7.1e-212 741.1 643 61.3
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 7.1e-212 741.1 639 61.3
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 6.7e-210 734.6 629 61.4
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 8.7e-210 734.2 653 60.2
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 3.3e-209 732.3 658 60.0
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 1.6e-208 729.9 649 59.9
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 2.2e-208 729.6 626 61.7
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.2e-208 729.6 642 60.9
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 1.4e-207 726.9 643 60.3
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 1.4e-207 726.9 642 61.7
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 1.8e-207 726.5 654 59.9
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.4e-207 726.1 649 59.8
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 2.0e-206 723.0 648 60.3
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 3.4e-206 722.2 658 59.1
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 4.5e-206 721.8 646 60.4
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 7.2e-204 714.5 636 58.8
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 1.2e-203 713.8 649 60.1
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 1.6e-203 713.4 652 58.3
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 6.1e-203 711.4 660 59.1
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 3.0e-202 709.1 663 57.9
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 6.7e-202 708.0 659 57.1
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 1.9e-201 706.4 634 59.3
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 7.4e-201 704.5 643 58.6
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 1.3e-200 703.7 630 62.2
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 2.4e-199 699.5 630 61.7
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 2.4e-199 699.5 643 57.5
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 2.4e-199 699.5 662 57.9
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 3.1e-199 699.1 669 58.3
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 5.3e-199 698.4 656 59.5
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 5.3e-199 698.4 652 57.4
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 1.2e-198 697.2 643 58.3
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 2.2e-197 693.0 648 60.2
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 8.5e-197 691.0 654 58.3
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.9e-196 689.9 615 60.0
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 2.5e-196 689.5 658 55.5
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 2.5e-196 689.5 630 61.3
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 5.5e-196 688.3 634 56.3
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.1e-195 686.4 667 57.9
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 2.7e-195 686.0 636 58.3
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 2.7e-195 686.0 636 58.3
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 4.7e-195 685.3 644 58.4
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 1.0e-194 684.1 643 58.3
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 1.5e-193 680.2 645 57.8
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 2.6e-193 679.5 648 57.7
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 4.4e-193 678.7 648 57.6
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 4.1e-191 672.2 675 54.2
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 5.9e-190 668.3 635 55.4
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.7e-189 666.8 608 60.0
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 8.5e-189 664.5 648 59.1
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 3.2e-188 662.5 650 55.5
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 3.6e-187 659.1 657 55.3
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 2.3e-186 656.4 492 66.9
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 5.2e-186 655.2 696 54.2
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 8.8e-186 654.4 641 56.2
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 2.6e-185 652.9 642 53.6
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 2.2e-181 639.8 536 61.6
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 2.0e-177 626.7 677 51.1
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 4.5e-174 615.5 655 52.2
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 4.2e-172 609.0 495 63.8
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 4.0e-170 602.4 587 55.9
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.8e-167 593.6 487 67.1
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.2e-166 590.9 647 53.3
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 1.3e-165 587.4 502 59.6
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 2.3e-165 586.6 522 59.2
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 5.0e-165 585.5 567 58.0
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 6.3e-160 568.5 678 49.1
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 3.1e-159 566.2 660 51.4
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 2.9e-157 559.7 697 47.5
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 1.2e-155 554.3 657 48.6
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 8.6e-149 531.6 535 56.4
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 3.6e-139 499.6 543 52.1
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.7e-134 483.4 601 48.8
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 8.7e-125 451.8 635 41.9
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 1.3e-117 427.9 520 47.9
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 1.7e-117 427.6 442 55.2
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 1.9e-116 424.1 757 39.1
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 6.4e-112 409.1 652 39.7
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 1.0e-101 375.2 279 65.6
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.7e-88 331.3 594 37.2
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 6.1e-86 322.8 376 50.3
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 5.7e-84 316.2 634 35.3
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 2.2e-83 314.3 342 51.5
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 1.8e-82 311.2 180 86.1
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 3.2e-79 300.4 331 51.4
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 3.9e-77 293.5 286 56.6
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 8.2e-75 285.8 494 38.7
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 1.5e-71 275.0 286 54.5
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.8e-69 268.1 420 45.7
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 7.4e-68 262.7 331 45.9
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 8.0e-62 242.7 206 65.0
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 1.8e-61 241.5 286 51.4
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 7.0e-58 229.6 378 42.3
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.0e-56 225.7 157 74.5
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.1e-55 222.2 149 75.2
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 1.4e-53 215.3 121 82.6
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 6.1e-46 189.9 180 67.2
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 6.8e-45 186.4 194 52.1
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 1.1e-39 169.1 385 37.1
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 7.5e-36 156.4 237 38.0
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 2.5e-31 141.4 677 26.9
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 2.4e-18 98.2 82 70.7
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 2.4e-18 98.2 55 87.3
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 3.3e-15 87.8 82 62.2
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 4.3e-15 87.4 85 58.8
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 8.9e-13 79.7 98 48.0
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 8.9e-13 79.7 82 53.7
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 1.3e-11 75.9 73 50.7
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 4.9e-11 73.9 59 61.0
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 6.4e-11 73.6 58 60.3
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 3.2e-10 71.2 73 47.9
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 1.3e-08 65.9 161 34.2
A02p43970 Brassica napus HOM05D005709 ORTHO05D006306 7.3e-07 60.1 52 61.5
GSVIVG01036155001 Vitis vinifera HOM05D005709 ORTHO05D006306 1.3e-06 59.3 53 49.1


User provided reference genes

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