Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 1.3e-144 516.5 301 100.0
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 5.6e-135 484.6 301 91.0
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 3.8e-123 445.3 302 85.4
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 1.0e-120 437.2 301 84.1
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.6e-113 413.3 301 78.7
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 1.9e-106 389.8 278 79.9
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 8.8e-104 380.9 305 75.7
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 8.8e-104 380.9 305 75.7
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 5.9e-100 368.2 304 72.7
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 1.3e-99 367.1 304 72.4
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 1.2e-97 360.5 304 71.7
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 1.4e-96 357.1 274 74.1
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 5.7e-95 351.7 291 71.5
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 3.8e-91 339.0 283 70.0
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 8.5e-91 337.8 279 70.3
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 1.1e-90 337.4 279 70.3
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 6.1e-73 278.5 271 61.6
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 1.1e-48 198.0 281 49.5
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 1.4e-48 197.6 276 51.8
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 1.4e-45 187.6 252 49.2
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 1.9e-45 187.2 254 50.4
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 3.2e-45 186.4 254 51.2
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 7.1e-45 185.3 286 44.8
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.6e-44 184.1 223 51.1
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 2.1e-44 183.7 261 48.3
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 2.7e-44 183.3 304 44.4
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 2.7e-44 183.3 252 49.2
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 3.5e-44 183.0 284 47.5
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 1.0e-43 181.4 257 50.6
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 2.3e-43 180.3 296 45.3
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 5.1e-43 179.1 284 46.1
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 6.6e-43 178.7 221 51.6
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.5e-42 177.6 266 46.2
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 5.6e-42 175.6 216 50.0
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 1.6e-41 174.1 236 48.3
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 1.6e-41 174.1 236 48.3
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 1.6e-41 174.1 197 54.8
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.1e-41 173.7 197 54.3
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 2.1e-41 173.7 226 49.1
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 2.1e-41 173.7 298 42.3
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 2.8e-41 173.3 153 63.4
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.8e-41 173.3 254 48.0
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 2.8e-41 173.3 213 51.2
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 6.2e-41 172.2 270 44.8
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 8.1e-41 171.8 126 81.0
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 8.1e-41 171.8 250 45.6
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.4e-40 171.0 230 48.3
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 1.8e-40 170.6 226 48.7
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 1.8e-40 170.6 245 46.5
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 2.4e-40 170.2 226 48.2
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 3.1e-40 169.9 274 43.8
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 3.1e-40 169.9 226 48.2
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 4.0e-40 169.5 269 46.5
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 4.0e-40 169.5 278 44.6
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 8.9e-40 168.3 212 50.9
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 8.9e-40 168.3 222 49.5
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 1.7e-38 164.1 246 48.4
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.7e-38 164.1 246 48.4
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.2e-38 163.7 219 49.8
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.9e-38 163.3 296 41.9
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 3.8e-38 162.9 250 45.6
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 4.9e-38 162.5 151 62.3
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 8.4e-38 161.8 195 51.3
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 1.1e-37 161.4 214 51.9
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.4e-37 161.0 277 44.0
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 1.4e-37 161.0 242 46.3
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 1.9e-37 160.6 225 46.7
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 2.4e-37 160.2 267 43.8
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 2.4e-37 160.2 288 42.0
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 3.2e-37 159.8 227 48.0
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 3.2e-37 159.8 226 50.0
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 9.2e-37 158.3 299 40.1
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 1.2e-36 157.9 259 43.6
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.6e-36 157.5 207 49.8
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 2.1e-36 157.1 207 50.7
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 2.7e-36 156.8 274 44.5
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 4.6e-36 156.0 230 46.5
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 7.8e-36 155.2 242 44.6
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 1.7e-35 154.1 226 46.0
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 1.7e-35 154.1 183 52.5
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.7e-35 154.1 229 46.3
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 8.7e-35 151.8 210 48.6
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 8.7e-35 151.8 253 45.8
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.5e-34 151.0 192 50.5
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 2.5e-34 150.2 282 39.7
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 4.3e-34 149.4 252 42.9
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 1.2e-33 147.9 291 40.5
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 1.2e-33 147.9 249 44.6
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.6e-33 147.5 217 45.6
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 1.6e-33 147.5 282 39.0
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 8.1e-33 145.2 239 42.3
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 8.1e-33 145.2 197 49.7
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 1.1e-32 144.8 215 47.4
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.4e-32 144.4 192 48.4
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 2.4e-32 143.7 262 42.4
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 3.1e-32 143.3 88 90.9
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 5.3e-32 142.5 296 40.5
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 5.3e-32 142.5 274 39.1
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 6.9e-32 142.1 274 39.1
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 9.0e-32 141.7 270 42.2
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 3.4e-31 139.8 205 46.3
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 3.4e-31 139.8 234 44.9
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 7.6e-31 138.7 154 53.2
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 9.9e-31 138.3 186 52.2
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 1.7e-30 137.5 167 50.9
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 1.7e-30 137.5 166 53.6
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.9e-30 136.7 135 60.7
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 4.9e-30 136.0 300 40.3
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 4.9e-30 136.0 213 45.1
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 7.1e-29 132.1 233 39.9
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 1.6e-28 131.0 179 48.6
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.6e-28 131.0 193 45.6
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 2.1e-28 130.6 302 36.1
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 6.0e-28 129.0 211 43.6
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 3.0e-27 126.7 203 41.4
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 8.7e-27 125.2 135 56.3
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 8.7e-27 125.2 131 55.7
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 5.6e-26 122.5 181 42.0
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 7.3e-26 122.1 221 38.0
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 2.1e-25 120.6 106 66.0
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 1.1e-24 118.2 210 40.0
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 3.1e-24 116.7 182 44.5
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 3.1e-24 116.7 185 42.2
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 4.0e-24 116.3 134 53.0
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 5.3e-24 115.9 188 43.1
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 3.4e-23 113.2 98 61.2
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 8.4e-22 108.6 135 51.1
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.9e-21 107.5 317 33.8
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 2.4e-21 107.1 123 50.4
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 7.1e-21 105.5 178 43.8
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 1.3e-17 94.7 124 49.2
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 6.2e-17 92.4 170 42.4
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.8e-16 90.9 106 50.0
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.7e-14 84.3 94 53.2
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 4.2e-13 79.7 121 43.0
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.6e-12 77.8 84 48.8
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 5.6e-10 69.3 168 31.0
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 1.6e-09 67.8 137 30.7
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 1.6e-09 67.8 130 36.2
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 8.2e-09 65.5 83 44.6
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.8e-08 64.3 77 50.6
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 9.0e-08 62.0 113 43.4
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.5e-07 61.2 60 56.7
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 1.5e-07 61.2 105 38.1
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 1.3e-06 58.2 85 48.2


User provided reference genes

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