Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G65220 Arabidopsis thaliana HOM05D005870 ORTHO05D007216 2.3e-80 302.4 174 100.0
Carub.0008s2608 Capsella rubella HOM05D005870 ORTHO05D007216 3.4e-76 288.5 174 96.0
AL8G42760 Arabidopsis lyrata HOM05D005870 ORTHO05D007216 1.0e-75 287.0 174 97.7
CARHR279150 Cardamine hirsuta HOM05D005870 ORTHO05D007216 8.7e-64 247.3 174 85.1
Sp2g28320 Schrenkiella parvula HOM05D005870 ORTHO05D007216 8.5e-59 230.7 175 78.9
Thhalv10005022m.g Eutrema salsugineum HOM05D005870 ORTHO05D007216 4.2e-58 228.4 174 79.3
BcaB02g09886 Brassica carinata HOM05D005870 ORTHO05D007216 1.6e-57 226.5 174 79.3
A02p43790 Brassica napus HOM05D005870 ORTHO05D007216 3.0e-56 222.2 170 78.2
BraA02t09303Z Brassica rapa HOM05D005870 ORTHO05D007216 3.0e-56 222.2 170 78.2
BcaC01g02758 Brassica carinata HOM05D005870 ORTHO05D007216 2.0e-55 219.5 174 78.2
BolC3t18343H Brassica oleracea HOM05D005870 ORTHO05D007216 2.0e-55 219.5 174 78.2
C03p60860 Brassica napus HOM05D005870 ORTHO05D007216 6.3e-54 214.5 174 77.0
Aa31LG1G16740 Aethionema arabicum HOM05D005870 ORTHO05D007216 4.1e-53 211.8 174 73.6
Nn5g30105 Nelumbo nucifera HOM05D005870 ORTHO05D007216 2.6e-52 209.1 174 70.7
A06p32070 Brassica napus HOM05D005870 ORTHO05D007216 1.3e-51 206.8 174 73.6
BraA06t26136Z Brassica rapa HOM05D005870 ORTHO05D007216 1.3e-51 206.8 174 73.6
BcaB07g34228 Brassica carinata HOM05D005870 ORTHO05D007216 2.2e-51 206.1 175 77.1
Nn1g05359 Nelumbo nucifera HOM05D005870 ORTHO05D007216 9.4e-50 200.7 168 67.9
THA.LOC104801696 Tarenaya hassleriana HOM05D005870 ORTHO05D007216 2.1e-49 199.5 150 76.7
Atru.chr4.42 Acer truncatum HOM05D005870 ORTHO05D007216 3.9e-48 195.3 174 67.2
Rhsim10G0163500 Rhododendron simsii HOM05D005870 ORTHO05D007216 5.2e-48 194.9 174 67.2
Dinv13195 Davidia involucrata HOM05D005870 ORTHO05D007216 2.0e-47 193.0 170 68.8
TAR381G0757 Trochodendron aralioides HOM05D005870 ORTHO05D007216 2.6e-47 192.6 169 66.9
Lsat_1_v5_gn_4_141420 Lactuca sativa HOM05D005870 ORTHO05D007216 5.7e-47 191.4 173 65.3
PGSC0003DMG400026946 Solanum tuberosum HOM05D005870 ORTHO05D007216 1.7e-46 189.9 170 67.1
vmacro07307 Vaccinium macrocarpon HOM05D005870 ORTHO05D007216 1.7e-46 189.9 175 69.1
Nitab4.5_0004855g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 2.2e-46 189.5 171 66.7
Nitab4.5_0000033g0220 Nicotiana tabacum HOM05D005870 ORTHO05D007216 2.8e-46 189.1 171 67.3
HanXRQChr15g0484171 Helianthus annuus HOM05D005870 ORTHO05D007216 6.3e-46 188.0 176 67.6
Solyc06g072470.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 6.3e-46 188.0 170 67.1
Sopen03g028660 Solanum pennellii HOM05D005870 ORTHO05D007216 6.3e-46 188.0 171 66.1
Sopen06g028840 Solanum pennellii HOM05D005870 ORTHO05D007216 6.3e-46 188.0 170 67.1
Hma1.2p1_0308F.1_g120250 Hydrangea macrophylla HOM05D005870 ORTHO05D007216 8.2e-46 187.6 176 65.9
Nitab4.5_0000430g0130 Nicotiana tabacum HOM05D005870 ORTHO05D007216 8.2e-46 187.6 170 65.9
Solyc03g097950.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 1.1e-45 187.2 171 66.1
MSTRG.3774 Avicennia marina HOM05D005870 ORTHO05D007216 1.4e-45 186.8 171 64.9
Nitab4.5_0006110g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 2.4e-45 186.0 170 66.5
Gohir.D11G220900 Gossypium hirsutum HOM05D005870 ORTHO05D007216 3.1e-45 185.7 171 65.5
Gorai.007G237100 Gossypium raimondii HOM05D005870 ORTHO05D007216 3.1e-45 185.7 171 65.5
Ca_17742_v3 Cicer arietinum L. HOM05D005870 ORTHO05D007216 4.1e-45 185.3 174 65.5
MD00G1199600 Malus domestica HOM05D005870 ORTHO05D007216 4.1e-45 185.3 175 64.6
CAN.G65.97 Capsicum annuum HOM05D005870 ORTHO05D007216 5.3e-45 184.9 169 65.1
Gohir.A11G202300 Gossypium hirsutum HOM05D005870 ORTHO05D007216 5.3e-45 184.9 171 65.5
Thecc.01G100700 Theobroma cacao HOM05D005870 ORTHO05D007216 7.0e-45 184.5 171 65.5
QL06p049269 Quercus lobata HOM05D005870 ORTHO05D007216 9.1e-45 184.1 172 68.0
Manes.13G093516 Manihot esculenta HOM05D005870 ORTHO05D007216 1.2e-44 183.7 175 66.9
PGSC0003DMG400033691 Solanum tuberosum HOM05D005870 ORTHO05D007216 1.2e-44 183.7 171 64.9
Cc07_g15090 Coffea canephora HOM05D005870 ORTHO05D007216 1.6e-44 183.3 179 63.7
CiPaw.04G100500 Carya illinoinensis HOM05D005870 ORTHO05D007216 2.0e-44 183.0 170 66.5
Peaxi162Scf00171g00927 Petunia axillaris HOM05D005870 ORTHO05D007216 2.6e-44 182.6 170 65.9
Migut.H02353 Erythranthe guttata HOM05D005870 ORTHO05D007216 5.9e-44 181.4 154 69.5
COL.COLO4_27254 Corchorus olitorius HOM05D005870 ORTHO05D007216 7.7e-44 181.0 171 65.5
Duzib187G0334 Durio zibethinus HOM05D005870 ORTHO05D007216 1.7e-43 179.9 171 66.7
Medtr8g090185 Medicago truncatula HOM05D005870 ORTHO05D007216 5.0e-43 178.3 174 63.2
PGR004G1211 Punica granatum HOM05D005870 ORTHO05D007216 1.1e-42 177.2 169 65.7
Actinidia20008 Actinidia chinensis HOM05D005870 ORTHO05D007216 1.5e-42 176.8 141 70.9
CDE10G0428 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 1.5e-42 176.8 143 69.9
Ciclev10026623m.g Citrus clementina HOM05D005870 ORTHO05D007216 1.5e-42 176.8 171 62.0
Glyma.05G178000 Glycine max HOM05D005870 ORTHO05D007216 1.5e-42 176.8 174 63.8
Sed0015800 Sechium edule HOM05D005870 ORTHO05D007216 1.5e-42 176.8 174 63.2
ECA232G4208 Erigeron canadensis HOM05D005870 ORTHO05D007216 1.9e-42 176.4 153 67.3
FAN23G0590 Fragaria x ananassa HOM05D005870 ORTHO05D007216 1.9e-42 176.4 174 62.6
Lj4g0027302 Lotus japonicus HOM05D005870 ORTHO05D007216 1.9e-42 176.4 174 62.6
CDE10G0106 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 2.5e-42 176.0 169 63.3
Oeu002170.1 Olea europaea HOM05D005870 ORTHO05D007216 3.2e-42 175.6 174 65.5
Duzib147G1590 Durio zibethinus HOM05D005870 ORTHO05D007216 5.5e-42 174.9 170 62.9
Phvul.002G256700 Phaseolus vulgaris HOM05D005870 ORTHO05D007216 7.2e-42 174.5 174 63.8
DCAR_014215 Daucus carota HOM05D005870 ORTHO05D007216 1.2e-41 173.7 170 61.8
MBI02_g35763_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 1.2e-41 173.7 154 69.5
Prupe.6G188000 Prunus persica HOM05D005870 ORTHO05D007216 3.6e-41 172.2 146 70.5
Glyma.08G135000 Glycine max HOM05D005870 ORTHO05D007216 4.7e-41 171.8 174 62.6
Cpa.g.sc615.2 Carica papaya HOM05D005870 ORTHO05D007216 6.1e-41 171.4 169 64.5
PSO210G6840 Papaver somniferum HOM05D005870 ORTHO05D007216 6.1e-41 171.4 175 57.7
Potri.007G093700 Populus trichocarpa HOM05D005870 ORTHO05D007216 6.1e-41 171.4 146 69.9
unitig_747.g21825 Utricularia gibba HOM05D000660 ORTHO05D000766 6.1e-41 171.4 169 62.1
VMungo0251G1964 Vigna mungo HOM05D005870 ORTHO05D007216 1.0e-40 170.6 174 62.1
PSO447G0167 Papaver somniferum HOM05D005870 ORTHO05D007216 1.4e-40 170.2 175 57.1
Eucgr.I00441 Eucalyptus grandis HOM05D005870 ORTHO05D007216 3.0e-40 169.1 153 68.0
Aqoxy6G00780 Aquilegia oxysepala HOM05D005870 ORTHO05D007216 5.2e-40 168.3 180 59.4
SalBow3G2704 Salvia bowleyana HOM05D005870 ORTHO05D007216 5.2e-40 168.3 172 61.6
CANSAT01G0848 Cannabis sativa HOM05D005870 ORTHO05D007216 8.8e-40 167.5 165 63.6
FAN26G0235 Fragaria x ananassa HOM05D005870 ORTHO05D007216 8.8e-40 167.5 174 60.9
FAN19G2750 Fragaria x ananassa HOM05D005870 ORTHO05D007216 1.2e-39 167.2 174 60.9
RcHm_v2.0_Chr2g0113161 Rosa chinensis HOM05D005870 ORTHO05D007216 1.5e-39 166.8 174 60.9
ClCG10G008830 Citrullus lanatus HOM05D005870 ORTHO05D007216 2.0e-39 166.4 174 62.1
FAN28G1626 Fragaria x ananassa HOM05D005870 ORTHO05D007216 2.0e-39 166.4 174 60.3
MBI05_g37050_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 2.0e-39 166.4 115 78.3
FvH4_1g20710 Fragaria vesca HOM05D005870 ORTHO05D007216 3.3e-39 165.6 174 60.3
SGA_v2.0_scaffold54G19505 Striga asiatica HOM05D005870 ORTHO05D007216 9.7e-39 164.1 170 62.9
Lalb_Chr12g0203881 Lupinus albus HOM05D005870 ORTHO05D007216 8.2e-38 161.0 150 63.3
TPR.G6297 Trifolium pratense HOM05D005870 ORTHO05D007216 2.4e-37 159.5 168 57.1
AUR62003803 Chenopodium quinoa HOM05D005870 ORTHO05D007216 7.0e-37 157.9 172 57.6
Lalb_Chr07g0185191 Lupinus albus HOM05D005870 ORTHO05D007216 1.2e-36 157.1 151 62.3
MD01G1031300 Malus domestica HOM05D005870 ORTHO05D007216 1.7e-35 153.3 175 58.3
EL10Ac6g15115 Beta vulgaris HOM05D005870 ORTHO05D007216 2.2e-35 152.9 150 60.7
Lj2A546G34 Lonicera japonica HOM05D005870 ORTHO05D007216 2.2e-35 152.9 130 66.2
CsaV3_4G008900 Cucumis sativus L. HOM05D005870 ORTHO05D007216 5.0e-35 151.8 151 60.9
Sc03g0002050 Simmondsia chinensis HOM05D005870 ORTHO05D007216 6.5e-35 151.4 146 60.3
arahy.Tifrunner.gnm1.ann1.Q6429D Arachis hypogaea HOM05D005870 ORTHO05D007216 9.4e-34 147.5 150 58.0
arahy.Tifrunner.gnm1.ann1.K43FII Arachis hypogaea HOM05D005870 ORTHO05D007216 1.2e-33 147.1 150 58.0
TWI74G0695 Tripterygium wilfordii HOM05D005870 ORTHO05D007216 2.1e-33 146.4 175 57.7
TWI53G1299 Tripterygium wilfordii HOM05D005870 ORTHO05D007216 2.6e-31 139.4 176 55.1
Os02g0754300 Oryza sativa ssp. japonica HOM05D005870 ORTHO05D007216 9.8e-31 137.5 166 53.6
Zm00001eb194130 Zea mays HOM05D005870 ORTHO05D007216 1.3e-30 137.1 162 53.1
Zm00001eb249540 Zea mays HOM05D005870 ORTHO05D007216 2.2e-30 136.3 104 70.2
AUR62001999 Chenopodium quinoa HOM05D005870 ORTHO05D007216 3.7e-30 135.6 150 56.0
Psat7g055240 Pisum sativum HOM05D005870 ORTHO05D007216 6.3e-30 134.8 152 55.3
Zm00001eb335180 Zea mays HOM05D005870 ORTHO05D007216 1.1e-29 134.0 104 69.2
Zm00001eb255290 Zea mays HOM05D005870 ORTHO05D007216 1.4e-29 133.7 104 69.2
MELO3C018954.2 Cucumis melo HOM05D005870 ORTHO05D007216 2.0e-28 129.8 150 54.7
Hund13620 Selenicereus undatus HOM05D005870 ORTHO05D007216 2.0e-28 129.8 162 54.3
Sabra07G0077600 Salix brachista HOM05D005870 ORTHO05D007216 2.5e-26 122.9 259 38.2
Hund16294 Selenicereus undatus HOM05D005870 ORTHO05D007216 1.0e-24 117.5 190 47.9
GSVIVG01004857001 Vitis vinifera HOM05D005870 ORTHO05D007216 1.0e-24 117.5 79 83.5
GSVIVG01013304001 Vitis vinifera HOM05D005870 ORTHO05D007216 1.0e-24 117.5 79 83.5
SMO347G0042 Selaginella moellendorffii HOM05D005870 ORTHO05D007216 5.7e-23 111.7 109 57.8
Pp3c9_19800 Physcomitrium patens HOM05D005870 ORTHO05D007216 8.3e-22 107.8 160 50.6
AagrBONN_evm.TU.Sc2ySwM_117.2528 Anthoceros agrestis HOM05D005870 ORTHO05D007216 3.1e-21 105.9 164 44.5
HPP92_013107 Vanilla planifolia HOM05D005870 ORTHO05D007216 1.2e-20 104.0 122 51.6
Cfa002651 Carpinus fangiana HOM05D005870 ORTHO05D007216 3.5e-20 102.4 118 55.1
Mapoly0011s0026 Marchantia polymorpha HOM05D005870 ORTHO05D007216 1.7e-19 100.1 160 42.5
Haze_24920 Corylus avellana HOM05D005870 ORTHO05D007216 6.6e-19 98.2 113 56.6
MSTRG.15716 Avicennia marina HOM05D005870 ORTHO05D007216 1.1e-18 97.4 119 54.6
SGA_v2.0_scaffold111G31512 Striga asiatica HOM05D005870 ORTHO05D007216 3.3e-18 95.9 121 54.5
Actinidia06560 Actinidia chinensis HOM05D005870 ORTHO05D007216 1.2e-17 94.0 113 56.6
Haze_24918 Corylus avellana HOM05D009730 ORTHO05D000126 5.8e-15 85.1 62 77.4
BolC2t12461H Brassica oleracea HOM05D005870 ORTHO05D007216 4.9e-14 82.0 55 89.1
ATR0782G037 Amborella trichopoda HOM05D005870 ORTHO05D007216 6.4e-14 81.6 80 61.2
Lj5C62T6 Lonicera japonica HOM05D005870 ORTHO05D007216 8.3e-14 81.3 75 65.3
HPP92_013094 Vanilla planifolia HOM05D005870 ORTHO05D007216 4.1e-13 79.0 74 59.5
CBR_g8034 Chara braunii HOM05D005870 ORTHO05D007216 1.6e-12 77.0 89 44.9
MBI18_g38162_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 1.3e-11 73.9 80 61.2
C02p63940 Brassica napus HOM05D000382 ORTHO05D000391 3.3e-10 69.3 62 71.0
MCO09G004 Micromonas commoda HOM05D005870 ORTHO05D007216 2.2e-06 56.6 73 41.1


User provided reference genes

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