Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 8.2e-177 623.6 318 100.0
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 5.4e-152 541.2 322 88.8
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 5.8e-130 468.0 322 78.3
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.9e-117 426.4 344 70.6
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 7.3e-117 424.5 344 71.5
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.7e-113 413.3 323 72.8
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 1.1e-112 410.6 335 70.4
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 2.7e-111 406.0 335 69.9
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 5.6e-109 398.3 339 68.7
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 5.6e-109 398.3 332 69.3
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 5.6e-109 398.3 332 69.3
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 5.6e-109 398.3 332 69.3
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 1.9e-93 346.7 319 65.8
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.6e-92 343.6 343 59.8
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 4.9e-89 332.0 329 62.6
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 6.4e-89 331.6 323 63.2
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 8.4e-89 331.3 328 61.9
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.1e-88 330.9 329 62.3
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.8e-76 289.7 341 53.1
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 3.7e-76 289.3 295 61.4
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 3.1e-75 286.2 365 51.2
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.1e-67 261.2 318 52.5
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 4.1e-67 259.2 318 54.1
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 3.6e-63 246.1 333 49.8
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 9.1e-59 231.5 333 47.4
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 4.5e-58 229.2 342 47.1
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 5.0e-57 225.7 329 47.7
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 2.0e-53 213.8 321 47.0
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 2.0e-53 213.8 321 47.0
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 2.8e-52 209.9 318 46.2
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 3.7e-52 209.5 319 46.4
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 4.5e-50 202.6 261 52.5
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 6.3e-44 182.2 354 38.4
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.6e-42 177.6 363 37.5
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 3.5e-42 176.4 367 38.7
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 4.5e-42 176.0 303 40.9
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.8e-41 172.9 361 38.2
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 3.2e-40 169.9 349 37.0
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 8.0e-39 165.2 317 38.5
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 1.4e-38 164.5 354 35.9
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 1.4e-38 164.5 348 35.6
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 4.0e-38 162.9 349 36.7
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 2.2e-36 157.1 354 37.6
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 6.3e-36 155.6 367 35.4
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 6.3e-36 155.6 356 32.3
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 8.3e-36 155.2 325 38.8
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 8.3e-36 155.2 142 56.3
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.1e-35 153.3 315 35.9
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 5.4e-35 152.5 336 37.2
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 7.0e-35 152.1 350 35.7
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 1.2e-34 151.4 342 33.9
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.2e-34 151.4 342 35.1
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.6e-34 151.0 301 36.5
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.6e-34 151.0 304 36.2
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.6e-34 151.0 304 36.2
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 2.7e-34 150.2 335 35.5
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.7e-34 150.2 342 34.2
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.3e-33 147.9 349 34.1
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 1.7e-33 147.5 323 37.2
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.3e-33 147.1 348 33.3
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 3.8e-33 146.4 345 35.9
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 1.1e-32 144.8 349 33.2
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 1.5e-32 144.4 343 33.2
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.5e-32 144.4 315 35.2
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.6e-31 141.0 268 37.7
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.6e-31 141.0 155 51.0
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 2.1e-31 140.6 340 34.4
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 2.1e-31 140.6 139 52.5
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 3.6e-31 139.8 375 32.8
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 5.2e-30 136.0 364 33.0
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 2.0e-29 134.0 380 33.2
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 4.4e-29 132.9 151 47.7
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 7.5e-29 132.1 199 42.2
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 9.8e-29 131.7 335 34.3
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 2.2e-28 130.6 173 45.1
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 4.9e-28 129.4 143 46.9
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 6.3e-28 129.0 359 30.6
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 1.4e-27 127.9 93 74.2
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.1e-27 126.3 327 32.4
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 2.0e-26 124.0 359 30.9
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 2.0e-26 124.0 325 35.1
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 4.5e-26 122.9 312 33.0
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 7.8e-26 122.1 307 34.2
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 1.0e-25 121.7 330 32.4
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 1.7e-25 120.9 199 38.7
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.9e-25 120.2 293 33.8
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 2.9e-25 120.2 312 31.1
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 5.0e-25 119.4 359 33.1
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 6.6e-25 119.0 313 33.5
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 8.6e-25 118.6 326 31.6
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 8.6e-25 118.6 346 32.4
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 1.9e-24 117.5 310 32.6
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 5.6e-24 115.9 183 38.8
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 5.6e-24 115.9 183 38.8
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 5.6e-24 115.9 218 36.2
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 1.2e-23 114.8 310 33.2
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 2.8e-23 113.6 310 34.5
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 6.1e-23 112.5 310 32.6
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 8.0e-23 112.1 321 32.4
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 1.0e-22 111.7 307 31.9
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 1.4e-22 111.3 313 30.4
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 6.8e-22 109.0 136 45.6
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 8.9e-22 108.6 203 35.5
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 1.5e-21 107.8 184 37.0
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 2.0e-21 107.5 339 32.4
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 4.4e-21 106.3 350 29.1
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 1.7e-20 104.4 349 28.7
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 2.2e-20 104.0 184 37.0
C03p45450 Brassica napus HOM05D005306 ORTHO05D006158 2.2e-20 104.0 141 44.7
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 2.2e-20 104.0 318 32.1
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 3.7e-20 103.2 351 29.9
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 4.9e-20 102.8 224 34.8
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 4.9e-20 102.8 336 31.8
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 6.4e-20 102.4 184 38.0
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.9e-19 100.9 193 35.2
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 1.6e-18 97.8 220 31.4
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 1.6e-18 97.8 109 47.7
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 2.0e-18 97.4 118 48.3
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 1.3e-17 94.7 302 29.8
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 1.7e-17 94.4 238 31.1
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 2.3e-17 94.0 340 27.4
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 5.0e-17 92.8 113 46.0
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.2e-15 88.2 91 50.5
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 2.1e-15 87.4 357 27.2
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 4.7e-15 86.3 317 30.0
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.1e-14 83.6 218 33.5
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 2.6e-13 80.5 132 38.6
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 3.4e-13 80.1 269 26.4
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 6.4e-12 75.9 307 26.1
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 6.4e-12 75.9 304 29.9
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 1.6e-10 71.2 149 34.2
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 2.7e-10 70.5 318 27.7
BcaNung06448 Brassica carinata HOM05D005306 ORTHO05D006158 1.7e-09 67.8 183 36.6
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 3.9e-09 66.6 101 40.6
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 1.2e-07 61.6 243 27.2
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 8.1e-07 58.9 113 32.7
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 8.1e-07 58.9 127 29.9
BcaC05g28701 Brassica carinata HOM05D005306 ORTHO05D006158 1.4e-06 58.2 74 51.4
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 1.4e-06 58.2 149 27.5
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 5.2e-06 56.2 284 25.0
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 8.9e-06 55.5 136 31.6


User provided reference genes

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