Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 4.4e-107 391.3 203 100.0
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 5.4e-97 357.8 203 90.6
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 1.2e-85 320.1 205 83.9
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 8.3e-82 307.4 201 81.6
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 1.1e-81 307.0 203 80.8
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 1.6e-80 303.1 204 79.9
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.6e-80 303.1 203 81.3
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 3.5e-80 302.0 203 79.3
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 3.5e-80 302.0 203 79.3
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 3.5e-80 302.0 203 79.3
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 1.0e-79 300.4 204 78.4
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 1.2e-64 250.4 174 77.0
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 4.6e-56 221.9 202 58.9
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 6.0e-56 221.5 204 60.8
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 3.0e-55 219.2 198 61.6
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 2.5e-54 216.1 207 60.9
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 4.3e-54 215.3 205 59.5
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 5.6e-54 214.9 202 59.4
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 1.3e-53 213.8 206 58.7
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 1.3e-53 213.8 206 58.7
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 4.8e-53 211.8 203 57.6
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 1.4e-52 210.3 206 58.3
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 2.4e-52 209.5 206 57.3
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 5.3e-52 208.4 201 58.2
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 8.4e-50 201.1 196 55.1
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 1.9e-49 199.9 201 58.7
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 7.1e-41 171.4 203 50.7
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 3.1e-36 156.0 214 45.3
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 1.5e-35 153.7 203 45.8
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 4.5e-35 152.1 195 45.6
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 2.2e-34 149.8 193 44.6
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 3.8e-34 149.1 202 42.6
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 3.8e-34 149.1 195 44.6
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 3.8e-34 149.1 195 44.6
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 1.4e-33 147.1 195 44.1
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 1.4e-33 147.1 195 44.1
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 4.2e-33 145.6 195 43.6
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 5.5e-33 145.2 195 43.6
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 7.1e-33 144.8 200 44.0
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 1.2e-32 144.1 208 40.9
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 1.2e-32 144.1 205 42.4
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 1.6e-32 143.7 192 42.2
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 2.1e-32 143.3 195 44.1
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 3.5e-32 142.5 196 39.8
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 3.5e-32 142.5 205 43.4
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 4.6e-32 142.1 208 41.8
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 1.3e-31 140.6 198 41.9
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 3.9e-31 139.0 196 39.8
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 1.5e-30 137.1 192 42.2
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 4.3e-30 135.6 203 42.4
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 4.3e-30 135.6 203 42.4
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 5.7e-30 135.2 195 41.0
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 7.4e-30 134.8 202 42.6
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 4.8e-29 132.1 191 41.4
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 1.1e-28 131.0 220 42.7
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 1.1e-28 131.0 197 38.6
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 4.1e-28 129.0 201 39.3
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 5.3e-28 128.6 198 39.9
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 6.9e-28 128.3 202 42.1
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 9.0e-28 127.9 229 38.9
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.2e-27 127.5 206 37.4
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 1.2e-27 127.5 208 38.0
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 1.5e-27 127.1 199 42.7
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 2.6e-27 126.3 124 56.5
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 3.4e-27 125.9 200 39.0
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 5.9e-27 125.2 200 40.5
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 5.9e-27 125.2 201 38.8
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.3e-26 124.0 205 37.6
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.3e-26 124.0 200 38.0
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.3e-26 124.0 162 43.8
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.7e-26 123.6 207 38.6
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.2e-26 123.2 200 39.0
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 3.8e-26 122.5 203 38.4
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 5.0e-26 122.1 205 38.5
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 6.5e-26 121.7 209 35.4
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 8.4e-26 121.3 166 42.2
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 1.1e-25 120.9 202 39.6
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.9e-25 120.2 200 37.5
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 2.5e-25 119.8 203 37.9
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.2e-25 119.0 210 36.7
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 4.2e-25 119.0 162 43.8
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 5.5e-25 118.6 198 38.4
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 7.2e-25 118.2 192 39.1
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 7.2e-25 118.2 203 37.4
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 9.3e-25 117.9 233 37.8
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 9.3e-25 117.9 233 37.8
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 9.3e-25 117.9 209 37.3
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.2e-24 117.5 208 38.0
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 4.6e-24 115.5 88 63.6
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 4.6e-24 115.5 188 40.4
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 6.1e-24 115.2 201 37.3
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.3e-23 113.2 197 35.5
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 3.9e-23 112.5 198 31.8
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 3.9e-23 112.5 202 36.1
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.9e-23 112.5 178 36.5
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 6.7e-23 111.7 203 37.4
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 1.1e-22 110.9 198 37.4
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.1e-22 110.9 203 34.5
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 4.3e-22 109.0 206 33.0
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 5.7e-22 108.6 199 35.7
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 7.4e-22 108.2 207 35.7
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 9.7e-22 107.8 198 35.4
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.3e-21 107.5 180 38.9
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 1.3e-21 107.5 200 35.0
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.7e-21 105.9 191 35.1
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 4.8e-21 105.5 197 33.5
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 4.8e-21 105.5 197 33.5
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.8e-21 105.5 190 34.2
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.8e-21 105.5 190 34.2
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 6.3e-21 105.1 197 33.5
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.3e-21 105.1 196 35.2
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 8.2e-21 104.8 197 34.0
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 5.3e-20 102.1 166 36.7
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 6.9e-20 101.7 197 32.0
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 1.5e-19 100.5 216 33.3
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 2.0e-19 100.1 171 39.2
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 2.0e-19 100.1 194 36.6
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 5.9e-19 98.6 189 34.9
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 7.7e-19 98.2 103 50.5
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 1.0e-18 97.8 198 31.8
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 1.3e-18 97.4 193 32.6
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 1.3e-18 97.4 197 32.0
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 1.7e-18 97.1 126 40.5
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.2e-18 96.7 154 36.4
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 2.2e-18 96.7 126 38.9
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 2.2e-18 96.7 197 32.5
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 2.2e-18 96.7 195 31.3
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 2.2e-18 96.7 208 35.1
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 2.9e-18 96.3 194 32.0
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 8.5e-18 94.7 193 31.6
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 1.4e-17 94.0 198 31.3
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 3.2e-17 92.8 196 33.2
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 3.2e-17 92.8 205 33.2
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 3.2e-17 92.8 200 30.5
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 4.2e-17 92.4 203 34.5
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 4.2e-17 92.4 198 29.8
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 9.4e-17 91.3 196 33.2
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 9.4e-17 91.3 211 31.3
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.2e-16 90.9 196 33.2
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 1.2e-16 90.9 204 29.9
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 1.6e-16 90.5 197 31.0
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 2.1e-16 90.1 200 35.5
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 2.7e-16 89.7 122 35.2
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 3.6e-16 89.4 198 29.3
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 4.6e-16 89.0 199 29.1
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 4.6e-16 89.0 198 28.8
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 6.1e-16 88.6 198 29.3
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 2.3e-15 86.7 204 33.3
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 2.3e-15 86.7 122 35.2
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 3.0e-15 86.3 198 29.8
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 5.1e-15 85.5 200 33.5
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 5.1e-15 85.5 192 30.2
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 6.7e-15 85.1 225 32.9
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 6.7e-15 85.1 188 34.0
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 6.7e-15 85.1 183 36.1
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 8.8e-15 84.7 203 32.5
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 8.8e-15 84.7 199 30.2
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 8.8e-15 84.7 158 35.4
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 2.0e-14 83.6 122 32.8
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 2.5e-14 83.2 196 30.1
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 3.3e-14 82.8 172 32.0
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 3.3e-14 82.8 204 32.4
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 5.7e-14 82.0 89 46.1
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.7e-14 82.0 118 35.6
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 7.4e-14 81.6 203 30.0
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 7.4e-14 81.6 118 34.7
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 9.7e-14 81.3 122 32.8
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 2.2e-13 80.1 202 31.2
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 1.4e-12 77.4 205 32.2
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.1e-12 75.9 141 34.0
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 2.6e-11 73.2 164 31.1
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 1.0e-10 71.2 166 34.3
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 1.0e-10 71.2 119 31.9
SEGI_20067 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 3.8e-10 69.3 136 37.5
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 5.0e-10 68.9 138 37.7
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 5.0e-10 68.9 134 41.0
SEGI_26050 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 1.2e-08 64.3 137 33.6
SEGI_16345 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 2.1e-08 63.5 123 38.2
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 3.6e-08 62.8 132 38.6
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 4.7e-08 62.4 135 32.6
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 4.7e-08 62.4 137 35.0
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 1.0e-07 61.2 140 33.6
ATR0753G036 Amborella trichopoda HOM05D003474 ORTHO05D003971 1.8e-07 60.5 202 29.7
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 8.8e-07 58.2 135 32.6
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 8.8e-07 58.2 137 34.3
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 3.3e-06 56.2 137 32.8
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 5.7e-06 55.5 191 26.7


User provided reference genes

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