Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G64480 Arabidopsis thaliana HOM05D007716 ORTHO05D009780 1.7e-114 416.0 213 100.0
AL8G41850 Arabidopsis lyrata HOM05D007716 ORTHO05D009780 6.0e-83 311.2 185 86.5
CARHR278450 Cardamine hirsuta HOM05D007716 ORTHO05D009780 2.6e-78 295.8 187 82.9
Sp2g27560 Schrenkiella parvula HOM05D007716 ORTHO05D009780 7.6e-78 294.3 198 77.8
BolC3t18437H Brassica oleracea HOM05D007716 ORTHO05D009780 6.1e-75 284.6 198 74.7
Carub.0008s2527 Capsella rubella HOM05D007716 ORTHO05D009780 3.0e-74 282.3 186 78.0
A06p31220 Brassica napus HOM05D007716 ORTHO05D009780 1.9e-73 279.6 187 78.1
C03p61760 Brassica napus HOM05D007716 ORTHO05D009780 3.3e-73 278.9 186 78.0
BraA06t26061Z Brassica rapa HOM05D007716 ORTHO05D009780 3.3e-73 278.9 187 77.5
Thhalv10004965m.g Eutrema salsugineum HOM05D007716 ORTHO05D009780 1.4e-68 263.5 191 74.9
BcaC01g02685 Brassica carinata HOM05D007716 ORTHO05D009780 3.7e-64 248.8 185 71.9
Aa31LG1G17430 Aethionema arabicum HOM05D007716 ORTHO05D009780 4.2e-60 235.3 189 64.6
THA.LOC104799649 Tarenaya hassleriana HOM05D007716 ORTHO05D009780 1.6e-51 206.8 189 62.4
QL11p026900 Quercus lobata HOM05D007716 ORTHO05D009780 4.7e-27 125.6 175 44.0
Solyc01g106380.2 Solanum lycopersicum HOM05D007716 ORTHO05D009780 5.2e-26 122.1 177 40.7
PGSC0003DMG400003116 Solanum tuberosum HOM05D007716 ORTHO05D009780 1.5e-25 120.6 124 50.0
Peaxi162Scf00299g00026 Petunia axillaris HOM05D007716 ORTHO05D009780 5.7e-25 118.6 125 52.0
Potri.001G286200 Populus trichocarpa HOM05D007716 ORTHO05D009780 1.3e-24 117.5 127 49.6
Duzib132G0367 Durio zibethinus HOM05D007716 ORTHO05D009780 4.9e-24 115.5 126 50.8
Nitab4.5_0010352g0060 Nicotiana tabacum HOM05D007716 ORTHO05D009780 6.4e-24 115.2 124 50.8
Ciclev10029299m.g Citrus clementina HOM05D007716 ORTHO05D009780 1.4e-23 114.0 130 48.5
Gorai.008G042500 Gossypium raimondii HOM05D007716 ORTHO05D009780 1.4e-23 114.0 137 47.4
Manes.10G092200 Manihot esculenta HOM05D007716 ORTHO05D009780 1.8e-23 113.6 137 43.8
Sopen01g048750 Solanum pennellii HOM05D007716 ORTHO05D009780 1.8e-23 113.6 170 39.4
COL.COLO4_17851 Corchorus olitorius HOM05D007716 ORTHO05D009780 2.4e-23 113.2 138 45.7
Gohir.D12G040700 Gossypium hirsutum HOM05D007716 ORTHO05D009780 4.1e-23 112.5 137 47.4
Nitab4.5_0009020g0070 Nicotiana tabacum HOM05D007716 ORTHO05D009780 4.1e-23 112.5 124 49.2
Potri.009G080400 Populus trichocarpa HOM05D007716 ORTHO05D009780 4.1e-23 112.5 135 46.7
Haze_10368 Corylus avellana HOM05D007716 ORTHO05D009780 7.0e-23 111.7 138 47.8
PGR142G1403 Punica granatum HOM05D007716 ORTHO05D009780 7.0e-23 111.7 126 48.4
Hma1.2p1_0703F.1_g206280 Hydrangea macrophylla HOM05D007716 ORTHO05D009780 9.2e-23 111.3 124 48.4
Atru.chr6.1374 Acer truncatum HOM05D007716 ORTHO05D009780 1.2e-22 110.9 181 39.8
Gohir.A12G031600 Gossypium hirsutum HOM05D007716 ORTHO05D009780 1.2e-22 110.9 137 46.7
MD10G1057800 Malus domestica HOM05D007716 ORTHO05D009780 2.0e-22 110.2 125 46.4
Sabra16G0178700 Salix brachista HOM05D007716 ORTHO05D009780 2.0e-22 110.2 127 47.2
Thecc.02G037300 Theobroma cacao HOM05D007716 ORTHO05D009780 3.5e-22 109.4 127 46.5
CiPaw.05G026000 Carya illinoinensis HOM05D007716 ORTHO05D009780 5.9e-22 108.6 138 47.1
Sabra09G0062200 Salix brachista HOM05D007716 ORTHO05D009780 1.3e-21 107.5 135 45.9
Nn5g29758 Nelumbo nucifera HOM05D007716 ORTHO05D009780 1.7e-21 107.1 122 46.7
TWI23G0541 Tripterygium wilfordii HOM05D007716 ORTHO05D009780 3.9e-21 105.9 140 45.0
Prupe.8G076600 Prunus persica HOM05D007716 ORTHO05D009780 5.0e-21 105.5 126 45.2
ClCG10G009750 Citrullus lanatus HOM05D007716 ORTHO05D009780 6.6e-21 105.1 126 46.8
PSO210G3893 Papaver somniferum HOM05D007716 ORTHO05D009780 6.6e-21 105.1 126 46.0
Cpa.g.sc20.53 Carica papaya HOM05D007716 ORTHO05D009780 1.5e-20 104.0 125 46.4
PSO761G0345 Papaver somniferum HOM05D007716 ORTHO05D009780 1.9e-20 103.6 126 45.2
TAR628G0805 Trochodendron aralioides HOM05D007716 ORTHO05D009780 5.6e-20 102.1 124 47.6
CANSAT54G1223 Cannabis sativa HOM05D007716 ORTHO05D009780 2.1e-19 100.1 123 40.7
Migut.B00514 Erythranthe guttata HOM05D007716 ORTHO05D009780 2.1e-19 100.1 130 43.8
Lj6g0015505 Lotus japonicus HOM05D007716 ORTHO05D009780 2.8e-19 99.8 124 46.8
DCAR_029284 Daucus carota HOM05D007716 ORTHO05D009780 3.6e-19 99.4 119 47.9
RcHm_v2.0_Chr6g0269271 Rosa chinensis HOM05D007716 ORTHO05D009780 8.0e-19 98.2 128 43.8
Aqoxy6G00623 Aquilegia oxysepala HOM05D000043 ORTHO05D002888 1.0e-18 97.8 123 43.1
Cc02_g20520 Coffea canephora HOM05D007716 ORTHO05D009780 1.0e-18 97.8 124 42.7
Oeu059885.1 Olea europaea HOM05D007716 ORTHO05D009780 1.8e-18 97.1 114 44.7
Ah.01g024230 Amaranthus hybridus HOM05D007716 ORTHO05D009780 4.0e-18 95.9 131 36.6
FvH4_2g11070 Fragaria vesca HOM05D007716 ORTHO05D009780 8.9e-18 94.7 129 40.3
MBI16_g17833_MAGBIO Magnolia biondii HOM05D007716 ORTHO05D009780 8.9e-18 94.7 111 45.0
Sed0024047 Sechium edule HOM05D007716 ORTHO05D009780 8.9e-18 94.7 135 43.0
FAN15G0824 Fragaria x ananassa HOM05D007716 ORTHO05D009780 2.0e-17 93.6 129 39.5
MSTRG.16641 Avicennia marina HOM05D007716 ORTHO05D009780 2.6e-17 93.2 129 41.9
AUR62043644 Chenopodium quinoa HOM05D007716 ORTHO05D009780 7.5e-17 91.7 134 36.6
AUR62027073 Chenopodium quinoa HOM05D007716 ORTHO05D009780 9.8e-17 91.3 134 37.3
FAN20G1331 Fragaria x ananassa HOM05D007716 ORTHO05D009780 1.7e-16 90.5 129 38.8
CsaV3_4G014630 Cucumis sativus L. HOM05D007716 ORTHO05D009780 2.2e-16 90.1 84 54.8
FAN24G2612 Fragaria x ananassa HOM05D007716 ORTHO05D009780 2.2e-16 90.1 129 38.8
VMungo0540G1513 Vigna mungo HOM05D007716 ORTHO05D009780 1.1e-15 87.8 124 38.7
Sc14g0003580 Simmondsia chinensis HOM05D007716 ORTHO05D009780 2.4e-15 86.7 121 39.7
Glyma.15G060900 Glycine max HOM05D007716 ORTHO05D009780 3.2e-15 86.3 124 37.1
Phvul.006G198900 Phaseolus vulgaris HOM05D007716 ORTHO05D009780 4.1e-15 85.9 124 37.9
FAN27G0331 Fragaria x ananassa HOM05D007716 ORTHO05D009780 5.4e-15 85.5 129 38.0
Glyma.13G254000 Glycine max HOM05D007716 ORTHO05D009780 5.4e-15 85.5 124 37.1
vmacro01903 Vaccinium macrocarpon HOM05D001206 ORTHO05D002068 5.4e-15 85.5 114 42.1
ECA236G5147 Erigeron canadensis HOM05D007716 ORTHO05D009780 9.2e-15 84.7 106 40.6
Lsat_1_v5_gn_7_83180 Lactuca sativa HOM05D007716 ORTHO05D009780 9.2e-15 84.7 126 38.1
Lalb_Chr20g0122741 Lupinus albus HOM05D007716 ORTHO05D009780 1.2e-14 84.3 127 39.4
Ca_00186_v3 Cicer arietinum L. HOM05D007716 ORTHO05D009780 1.6e-14 84.0 183 35.0
TPR.G32644 Trifolium pratense HOM05D007716 ORTHO05D009780 1.6e-14 84.0 138 39.1
Psat1g212560 Pisum sativum HOM05D007716 ORTHO05D009780 2.0e-14 83.6 122 42.6
unitig_61.g26045 Utricularia gibba HOM05D007716 ORTHO05D009780 2.0e-14 83.6 132 38.6
Eucgr.I02564 Eucalyptus grandis HOM05D007716 ORTHO05D009780 1.0e-13 81.3 128 34.4
SalBow6G6774 Salvia bowleyana HOM05D007716 ORTHO05D009780 5.0e-13 79.0 131 35.9
SGA_v2.0_scaffold342G49411 Striga asiatica HOM05D007716 ORTHO05D009780 1.1e-12 77.8 179 27.9
Medtr2g010200 Medicago truncatula HOM05D007716 ORTHO05D009780 1.5e-12 77.4 122 38.5
Actinidia02415 Actinidia chinensis HOM05D007716 ORTHO05D009780 4.3e-12 75.9 78 53.8
Peaxi162Scf00299g00025 Petunia axillaris HOM05D007716 ORTHO05D009780 4.3e-12 75.9 63 55.6
Eucgr.I02552 Eucalyptus grandis HOM05D007716 ORTHO05D009780 7.3e-12 75.1 94 38.3
CDE04G3440 Ceratophyllum demersum HOM05D000620 ORTHO05D000537 1.6e-11 73.9 109 37.6
arahy.Tifrunner.gnm1.ann1.1SXR49 Arachis hypogaea HOM05D007716 ORTHO05D009780 4.7e-11 72.4 173 28.9
arahy.Tifrunner.gnm1.ann1.84YYIV Arachis hypogaea HOM05D007716 ORTHO05D009780 1.1e-10 71.2 170 28.8
Lj9P341T42 Lonicera japonica HOM05D007716 ORTHO05D009780 8.9e-10 68.2 65 44.6
Dinv08960 Davidia involucrata HOM05D007716 ORTHO05D009780 1.5e-09 67.4 66 51.5
ATR0767G063 Amborella trichopoda HOM05D007716 ORTHO05D009780 2.0e-09 67.0 105 37.1


User provided reference genes

Program Settings