Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 1.6e-191 672.5 334 100.0
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 3.9e-185 651.4 332 96.7
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 1.1e-184 649.8 332 96.4
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 4.6e-178 627.9 328 93.6
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 7.8e-178 627.1 331 92.7
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 1.7e-177 625.9 331 93.7
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 3.0e-177 625.2 329 92.1
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 3.0e-177 625.2 329 92.1
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 7.3e-176 620.5 331 91.5
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 7.3e-176 620.5 331 91.5
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 9.5e-176 620.2 331 91.5
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 2.1e-175 619.0 331 92.4
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 6.2e-175 617.5 331 91.2
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 9.2e-171 603.6 330 88.5
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 1.6e-159 566.2 329 81.2
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 3.1e-158 562.0 327 82.6
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 4.0e-158 561.6 327 82.6
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 4.9e-156 554.7 324 82.7
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.1e-155 553.5 327 81.3
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 1.9e-155 552.7 327 81.3
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 4.2e-155 551.6 327 80.7
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.6e-154 549.7 327 80.7
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 1.0e-153 547.0 328 78.7
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 1.7e-153 546.2 327 79.5
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 3.0e-153 545.4 327 79.5
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 6.6e-153 544.3 326 78.2
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 6.6e-153 544.3 327 80.7
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 1.5e-152 543.1 327 78.9
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 1.5e-152 543.1 326 80.1
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 1.9e-152 542.7 327 78.3
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.9e-152 542.7 329 79.9
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 4.3e-152 541.6 326 79.1
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 5.6e-152 541.2 327 78.9
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 7.3e-152 540.8 327 79.8
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 1.3e-151 540.0 326 78.8
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 2.1e-151 539.3 328 78.7
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 2.8e-151 538.9 327 79.5
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 3.6e-151 538.5 327 78.6
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 3.6e-151 538.5 326 78.2
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 6.2e-151 537.7 326 80.1
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 1.4e-150 536.6 328 79.0
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 6.9e-150 534.3 342 76.6
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 1.2e-149 533.5 331 77.3
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 1.2e-149 533.5 329 77.8
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 1.5e-149 533.1 328 77.4
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 1.5e-149 533.1 326 78.2
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 1.5e-149 533.1 326 77.6
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 1.5e-149 533.1 326 77.6
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 2.0e-149 532.7 326 78.5
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 2.6e-149 532.3 324 78.4
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 3.4e-149 531.9 326 78.5
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 5.8e-149 531.2 324 78.1
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 5.8e-149 531.2 332 77.1
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 7.6e-149 530.8 333 76.9
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 1.3e-148 530.0 321 78.2
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 1.7e-148 529.6 326 77.3
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 2.2e-148 529.3 328 77.7
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 3.8e-148 528.5 327 76.1
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 4.9e-148 528.1 330 77.9
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 8.4e-148 527.3 326 78.2
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 1.9e-147 526.2 326 76.7
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 1.9e-147 526.2 329 75.4
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 5.5e-147 524.6 326 77.3
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 7.1e-147 524.2 330 75.8
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 7.1e-147 524.2 328 75.6
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 9.3e-147 523.9 326 77.3
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 1.6e-146 523.1 328 77.4
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 2.7e-146 522.3 328 77.7
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 2.7e-146 522.3 329 76.3
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 4.6e-146 521.5 399 67.2
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 4.6e-146 521.5 326 76.7
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 6.0e-146 521.2 327 75.8
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 6.0e-146 521.2 312 78.5
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.0e-145 520.4 328 75.3
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 3.9e-145 518.5 326 75.5
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 3.9e-145 518.5 324 76.9
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 6.7e-145 517.7 327 76.1
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 9.6e-144 513.8 327 76.5
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 1.3e-143 513.5 327 74.3
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 2.1e-143 512.7 327 76.5
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 2.8e-143 512.3 327 75.8
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 4.8e-143 511.5 322 78.0
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 6.9e-142 507.7 328 74.1
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 6.9e-142 507.7 328 74.7
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 2.6e-141 505.8 322 73.6
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 2.9e-140 502.3 327 74.0
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 1.1e-139 500.4 357 70.6
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 1.1e-139 500.4 357 70.9
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 4.6e-138 495.0 348 69.5
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 5.7e-136 488.0 328 72.0
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 7.4e-136 487.6 315 73.3
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 3.1e-134 482.3 327 71.3
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 6.1e-130 468.0 326 70.6
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 9.0e-126 454.1 327 67.6
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 3.6e-122 442.2 286 73.4
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 7.7e-117 424.5 334 61.7
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 4.2e-115 418.7 342 65.2
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 1.6e-114 416.8 327 64.5
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 3.9e-113 412.1 350 61.7
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 4.4e-112 408.7 287 70.4
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 1.1e-110 404.1 267 71.2
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 4.5e-109 398.7 324 60.2
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 1.9e-107 393.3 330 59.1
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 1.5e-104 383.6 331 60.1
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 3.7e-103 379.0 324 58.6
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 2.2e-100 369.8 324 57.4
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 3.6e-98 362.5 222 76.6
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 2.3e-97 359.8 322 56.2
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.2e-96 357.5 326 55.8
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 2.6e-96 356.3 323 56.0
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 5.7e-96 355.1 322 54.0
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 7.5e-96 354.8 220 75.9
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 3.7e-95 352.4 326 56.4
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 4.8e-95 352.1 329 54.4
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 4.8e-95 352.1 331 52.9
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 2.0e-93 346.7 329 53.8
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 5.9e-93 345.1 224 75.9
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 3.8e-92 342.4 327 54.4
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 9.4e-91 337.8 324 52.8
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 2.1e-90 336.7 324 53.7
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 1.4e-89 334.0 326 52.1
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 1.8e-89 333.6 324 52.2
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 4.0e-89 332.4 326 54.3
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 2.0e-88 330.1 324 53.4
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 9.5e-83 311.2 230 69.1
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 3.6e-82 309.3 323 50.5
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 5.2e-81 305.4 322 49.1
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.3e-79 300.8 329 48.6
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 7.0e-78 295.0 329 48.3
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 8.0e-74 281.6 258 53.9
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 1.4e-62 244.2 215 56.3
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 4.1e-62 242.7 145 79.3
Actinidia26597 Actinidia chinensis HOM05D004164 ORTHO05D004891 6.6e-60 235.3 148 77.0
FvH4_2g11900 Fragaria vesca HOM05D004164 ORTHO05D004891 1.5e-56 224.2 140 75.0
FAN24G1884 Fragaria x ananassa HOM05D004164 ORTHO05D004891 2.0e-56 223.8 180 64.4
TPR.G9891 Trifolium pratense HOM05D004164 ORTHO05D004891 1.7e-55 220.7 173 67.1
MD05G1043700 Malus domestica HOM05D004164 ORTHO05D004891 1.6e-50 204.1 215 53.0
PSO646G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 5.8e-48 195.7 175 53.7
TPR.G11284 Trifolium pratense HOM05D004164 ORTHO05D004891 7.6e-48 195.3 129 70.5
Nn2g14913 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.7e-47 194.1 321 38.6
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 1.7e-47 194.1 194 49.5
FvH4_2g11890 Fragaria vesca HOM05D004164 ORTHO05D004891 2.1e-42 177.2 136 65.4
FAN24G2526 Fragaria x ananassa HOM05D004164 ORTHO05D004891 2.8e-42 176.8 105 77.1
TPR.G19821 Trifolium pratense HOM05D004164 ORTHO05D004891 9.9e-40 168.3 158 54.4
Pp3s30_626 Physcomitrium patens HOM05D004164 ORTHO05D004891 2.3e-36 157.1 368 32.9
PRCOL_00000119 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 2.4e-30 137.1 331 32.3
Cfa026765 Carpinus fangiana HOM05D004164 ORTHO05D004891 7.9e-29 132.1 350 29.4
Cfa023826 Carpinus fangiana HOM05D004164 ORTHO05D004891 4.8e-26 122.9 323 30.3
Prupe.8G063900 Prunus persica HOM05D004164 ORTHO05D004891 1.8e-25 120.9 79 69.6
PSO400G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 9.0e-25 118.6 98 55.1
TPR.G10092 Trifolium pratense HOM05D004164 ORTHO05D004891 3.4e-24 116.7 67 73.1
MD10G1050600 Malus domestica HOM05D004164 ORTHO05D004891 7.6e-24 115.5 286 30.1
COL.COLO4_01173 Corchorus olitorius HOM05D004164 ORTHO05D004891 3.7e-18 96.7 255 31.8
CSS0002492 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.4e-17 94.7 60 80.0
MCO10G397 Micromonas commoda HOM05D004164 ORTHO05D004891 3.1e-17 93.6 330 28.2
Cfa026889 Carpinus fangiana HOM05D004164 ORTHO05D004891 9.0e-17 92.0 234 32.5
Hma1.2p1_0784F.1_g217070 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 1.2e-16 91.7 74 64.9
Nn5g30063 Nelumbo nucifera HOM05D004164 ORTHO05D004891 2.2e-15 87.4 57 77.2
MBI02_g02172_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 3.6e-13 80.1 42 85.7
TAR019G0004 Trochodendron aralioides HOM05D004164 ORTHO05D004891 8.7e-12 75.5 83 50.6
MBI18_g38521_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.1e-11 75.1 143 36.4
Zm00001eb051650 Zea mays HOM05D004164 ORTHO05D004891 1.9e-11 74.3 48 72.9
TAR622G0536 Trochodendron aralioides HOM05D004164 ORTHO05D000005 3.7e-10 70.1 65 53.8
SGA_v2.0_scaffold72G24132 Striga asiatica HOM05D004164 ORTHO05D004891 8.2e-10 68.9 44 72.7
PRCOL_00002754 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 4.1e-09 66.6 118 38.1
SGA_v2.0_scaffold47G17582 Striga asiatica HOM05D004164 ORTHO05D004891 2.6e-08 63.9 47 66.0
SGA_v2.0_scaffold48G17919 Striga asiatica HOM05D004164 ORTHO05D004891 3.4e-08 63.5 43 72.1


User provided reference genes

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