Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 8.6e-120 433.7 228 100.0
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 6.6e-112 407.5 228 94.7
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 4.2e-106 388.3 229 89.1
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 2.3e-104 382.5 228 87.7
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 8.7e-104 380.6 228 88.6
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 7.3e-103 377.5 228 87.3
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 5.6e-95 351.3 229 84.3
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 3.7e-94 348.6 231 84.4
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 8.1e-94 347.4 229 83.0
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 6.9e-93 344.4 229 82.5
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 9.0e-93 344.0 229 82.5
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 2.0e-92 342.8 229 82.5
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 4.2e-90 335.1 248 75.8
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 1.6e-86 323.2 216 81.5
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 2.4e-85 319.3 223 78.9
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 2.0e-84 316.2 218 78.9
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 4.5e-84 315.1 223 78.9
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 4.9e-83 311.6 223 78.0
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 8.4e-83 310.8 217 78.3
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 1.1e-82 310.5 223 77.1
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 1.6e-78 296.6 223 76.2
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 4.1e-77 292.0 222 74.3
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 2.8e-62 242.7 250 58.0
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 4.8e-62 241.9 246 60.2
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 8.2e-62 241.1 240 58.3
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 3.1e-61 239.2 252 57.1
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 3.1e-61 239.2 252 57.1
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 2.6e-60 236.1 249 56.6
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 4.5e-60 235.3 244 59.4
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 5.9e-60 235.0 254 55.5
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 5.9e-60 235.0 248 58.9
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 1.3e-59 233.8 246 57.3
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 2.9e-59 232.6 247 57.1
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 7.2e-58 228.0 255 55.3
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 1.6e-57 226.9 248 54.4
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 4.7e-57 225.3 254 55.9
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 6.1e-57 224.9 248 54.0
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 8.0e-57 224.6 250 56.0
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 8.0e-57 224.6 205 60.5
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 1.0e-56 224.2 252 56.0
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 3.9e-56 222.2 246 55.7
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 6.7e-56 221.5 242 57.0
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 6.7e-56 221.5 241 57.3
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 3.3e-55 219.2 252 52.8
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 3.3e-55 219.2 244 54.5
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 4.4e-55 218.8 248 54.0
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 5.7e-55 218.4 246 56.1
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 7.4e-55 218.0 251 55.0
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 7.4e-55 218.0 255 54.5
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 1.3e-54 217.2 248 54.4
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 1.3e-54 217.2 195 64.6
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 8.2e-54 214.5 248 55.2
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 1.8e-53 213.4 248 54.0
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 1.8e-53 213.4 234 53.8
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 1.8e-53 213.4 237 55.7
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 2.4e-53 213.0 244 52.5
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 2.4e-53 213.0 249 55.0
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 3.1e-53 212.6 250 52.8
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 7.0e-53 211.5 255 52.5
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 7.0e-53 211.5 244 54.1
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 9.1e-53 211.1 237 53.6
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 9.1e-53 211.1 252 52.8
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 9.1e-53 211.1 248 55.2
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 1.6e-52 210.3 245 52.2
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 1.6e-52 210.3 198 57.1
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 3.5e-52 209.1 248 55.2
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 4.5e-52 208.8 240 53.8
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 7.7e-52 208.0 246 53.3
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 1.3e-51 207.2 268 52.2
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 1.7e-51 206.8 263 49.0
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 5.0e-51 205.3 243 53.9
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 1.1e-50 204.1 243 51.4
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 2.5e-50 203.0 238 53.8
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 2.5e-50 203.0 248 49.6
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 4.2e-50 202.2 247 51.8
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 5.5e-50 201.8 246 50.8
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 1.2e-49 200.7 244 50.4
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 2.1e-49 199.9 268 48.1
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 2.7e-49 199.5 256 49.2
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 4.7e-49 198.7 165 71.5
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 6.1e-49 198.4 243 50.2
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 6.1e-49 198.4 256 50.0
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 1.0e-48 197.6 276 47.5
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 1.8e-48 196.8 241 53.1
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 8.8e-48 194.5 211 54.5
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 3.4e-47 192.6 256 49.6
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 3.4e-47 192.6 233 51.9
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 5.7e-47 191.8 242 48.8
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 7.5e-47 191.4 253 49.0
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 9.8e-47 191.0 243 51.9
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 1.7e-46 190.3 260 50.8
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 1.7e-46 190.3 290 45.5
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 8.3e-46 188.0 187 55.1
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 8.3e-46 188.0 242 48.3
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 2.4e-45 186.4 249 49.8
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 3.5e-44 182.6 242 48.8
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 4.5e-44 182.2 243 49.8
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 1.1e-42 177.6 272 47.4
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 1.5e-42 177.2 243 50.2
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 4.2e-42 175.6 242 46.7
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 3.6e-41 172.6 136 68.4
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 6.1e-41 171.8 255 47.8
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 4.0e-40 169.1 138 65.9
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 5.2e-40 168.7 129 66.7
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 5.2e-40 168.7 247 49.8
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.2e-39 167.5 138 65.2
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 5.7e-39 165.2 136 66.2
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 9.8e-39 164.5 204 48.5
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 2.4e-37 159.8 250 44.4
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 4.1e-37 159.1 232 46.1
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 3.5e-36 156.0 236 46.6
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 1.7e-35 153.7 234 44.9
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 3.6e-33 146.0 121 65.3
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 6.1e-33 145.2 236 45.8
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 5.2e-32 142.1 252 41.7
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 1.7e-30 137.1 124 60.5
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 8.3e-30 134.8 238 39.5
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 1.4e-29 134.0 71 90.1
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 1.4e-29 134.0 184 46.7
BolC6t38485H Brassica oleracea HOM05D005104 ORTHO05D006614 4.1e-29 132.5 123 66.7
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 2.0e-28 130.2 90 80.0
C07p45690 Brassica napus HOM05D005104 ORTHO05D021970 1.0e-24 117.9 157 52.9
C09p03790 Brassica napus HOM05D005104 ORTHO05D006614 1.5e-23 114.0 158 51.3
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 3.4e-23 112.8 245 40.0
C03p52730 Brassica napus HOM05D005104 ORTHO05D021970 1.3e-22 110.9 166 50.6
C05p26840 Brassica napus HOM05D005104 ORTHO05D006614 1.3e-22 110.9 137 55.5
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 1.4e-21 107.5 72 72.2
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 1.9e-18 97.1 180 38.3
A10p06060 Brassica napus HOM05D005104 ORTHO05D006614 3.6e-17 92.8 78 67.9
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 6.8e-16 88.6 176 40.9
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 1.9e-13 80.5 171 36.8
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 2.4e-13 80.1 229 30.1
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 2.4e-13 80.1 139 46.0
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 4.3e-10 69.3 147 37.4
BolC7t46413H Brassica oleracea HOM05D005104 ORTHO05D006614 3.1e-08 63.2 81 50.6
Cre12.g509300 Chlamydomonas reinhardtii HOM05D005104 ORTHO05D006614 1.5e-07 60.8 189 30.7
Hma1.2p1_0516F.1_g170490 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 1.5e-07 60.8 123 40.7


User provided reference genes

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