Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G64010 Arabidopsis thaliana HOM05D007225 ORTHO05D009062 2.2e-126 455.7 237 100.0
AL8G41270 Arabidopsis lyrata HOM05D007225 ORTHO05D009062 1.1e-114 416.8 237 90.7
Carub.0008s2479 Capsella rubella HOM05D007225 ORTHO05D009062 1.4e-109 399.8 239 88.3
Sp2g27080 Schrenkiella parvula HOM05D007225 ORTHO05D009062 1.6e-105 386.3 238 86.1
C03p62330 Brassica napus HOM05D007225 ORTHO05D009062 2.1e-105 386.0 237 84.4
BcaC01g02654 Brassica carinata HOM05D007225 ORTHO05D009062 4.8e-105 384.8 237 84.0
BolC3t18495H Brassica oleracea HOM05D007225 ORTHO05D009062 4.8e-105 384.8 237 84.0
CARHR277930 Cardamine hirsuta HOM05D007225 ORTHO05D002208 5.3e-104 381.3 239 86.2
Thhalv10004850m.g Eutrema salsugineum HOM05D007225 ORTHO05D009062 5.8e-103 377.9 238 85.3
A06p30630 Brassica napus HOM05D007225 ORTHO05D009062 5.5e-101 371.3 237 82.7
BraA06t26013Z Brassica rapa HOM05D007225 ORTHO05D009062 9.3e-101 370.5 237 82.7
Aa31LG1G17910 Aethionema arabicum HOM05D007225 ORTHO05D009062 4.5e-87 325.1 252 72.2
THA.LOC104818429 Tarenaya hassleriana HOM05D007225 ORTHO05D009062 3.5e-71 272.3 239 65.3
Cpa.g.sc42.174 Carica papaya HOM05D007225 ORTHO05D009062 2.2e-49 199.9 257 46.3
Lalb_Chr13g0296631 Lupinus albus HOM05D007225 ORTHO05D009062 1.4e-48 197.2 240 48.8
Ca_17629_v3 Cicer arietinum L. HOM05D007225 ORTHO05D009062 7.0e-48 194.9 243 49.8
Prupe.4G273000 Prunus persica HOM05D007225 ORTHO05D009062 7.8e-47 191.4 246 47.6
RcHm_v2.0_Chr4g0412751 Rosa chinensis HOM05D007225 ORTHO05D009062 7.8e-47 191.4 239 45.2
CiPaw.04G081200 Carya illinoinensis HOM05D007225 ORTHO05D009062 1.7e-46 190.3 250 45.6
Thecc.01G134800 Theobroma cacao HOM05D007225 ORTHO05D009062 1.7e-46 190.3 244 48.8
Ciclev10002244m.g Citrus clementina HOM05D007225 ORTHO05D009062 2.3e-46 189.9 247 48.2
FAN12G1161 Fragaria x ananassa HOM05D007225 ORTHO05D009062 2.9e-46 189.5 239 43.5
Atru.chr4.938 Acer truncatum HOM05D007225 ORTHO05D009062 6.6e-46 188.3 249 45.4
TPR.G37342 Trifolium pratense HOM05D007225 ORTHO05D009062 1.5e-45 187.2 241 46.9
FvH4_4g13030 Fragaria vesca HOM05D007225 ORTHO05D009062 1.9e-45 186.8 239 43.5
Eucgr.I00189 Eucalyptus grandis HOM05D007225 ORTHO05D009062 4.3e-45 185.7 241 45.6
Lj4g0008022 Lotus japonicus HOM05D007225 ORTHO05D009062 4.3e-45 185.7 242 46.7
Dinv24394 Davidia involucrata HOM05D007225 ORTHO05D009062 7.3e-45 184.9 248 46.0
TAR625G0602 Trochodendron aralioides HOM05D007225 ORTHO05D009062 1.2e-44 184.1 258 43.8
CANSAT01G2273 Cannabis sativa HOM05D007225 ORTHO05D009062 2.8e-44 183.0 242 46.7
Potri.005G064800 Populus trichocarpa HOM05D007225 ORTHO05D009062 4.7e-44 182.2 252 43.3
Potri.005G064951 Populus trichocarpa HOM05D007225 ORTHO05D009062 4.7e-44 182.2 252 43.3
Psat7g045080 Pisum sativum HOM05D007225 ORTHO05D009062 6.1e-44 181.8 243 46.1
QL10p043051 Quercus lobata HOM05D007225 ORTHO05D009062 1.8e-43 180.3 292 41.8
FAN07G2982 Fragaria x ananassa HOM05D007225 ORTHO05D009062 2.3e-43 179.9 239 41.8
Gohir.D10G108600 Gossypium hirsutum HOM05D007225 ORTHO05D009062 8.9e-43 177.9 248 44.8
MD17G1201700 Malus domestica HOM05D007225 ORTHO05D009062 8.9e-43 177.9 247 43.7
PGR119G1418 Punica granatum HOM05D007225 ORTHO05D009062 1.2e-42 177.6 239 44.4
COL.COLO4_35773 Corchorus olitorius HOM05D007225 ORTHO05D009062 1.5e-42 177.2 250 44.8
Gorai.011G119000 Gossypium raimondii HOM05D007225 ORTHO05D009062 1.5e-42 177.2 248 44.4
CSS0045766 Camellia sinensis var. sinensis HOM05D007225 ORTHO05D009062 2.0e-42 176.8 248 43.1
Sabra05G0053800 Salix brachista HOM05D007225 ORTHO05D009062 2.6e-42 176.4 252 42.9
MBI06_g27455_MAGBIO Magnolia biondii HOM05D007225 ORTHO05D009062 9.8e-42 174.5 260 41.5
PGSC0003DMG400012541 Solanum tuberosum HOM05D007225 ORTHO05D009062 1.7e-41 173.7 246 43.1
TAR381G0670 Trochodendron aralioides HOM05D007225 ORTHO05D009062 4.9e-41 172.2 258 42.6
Hma1.2p1_0539F.1_g174530 Hydrangea macrophylla HOM05D007225 ORTHO05D009062 1.9e-40 170.2 252 44.0
vmacro12787 Vaccinium macrocarpon HOM05D007225 ORTHO05D009062 3.2e-40 169.5 248 42.7
Nitab4.5_0000386g0080 Nicotiana tabacum HOM05D007225 ORTHO05D009062 5.4e-40 168.7 243 42.8
Solyc01g105570.4 Solanum lycopersicum HOM05D007225 ORTHO05D009062 7.0e-40 168.3 245 43.3
Cc07_g18810 Coffea canephora HOM05D007225 ORTHO05D009062 4.6e-39 165.6 257 42.8
Sopen01g048040 Solanum pennellii HOM05D007225 ORTHO05D009062 4.6e-39 165.6 245 42.9
GSVIVG01022343001 Vitis vinifera HOM05D007225 ORTHO05D009062 2.5e-37 159.8 150 56.7
Aqoxy5G02304 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 3.3e-37 159.5 272 40.1
Manes.12G157300 Manihot esculenta HOM05D007225 ORTHO05D009062 9.5e-37 157.9 211 45.5
Glyma.05G192800 Glycine max HOM05D007225 ORTHO05D009062 1.6e-36 157.1 242 43.4
Medtr8g093850 Medicago truncatula HOM05D007225 ORTHO05D009062 2.1e-36 156.8 147 55.1
Gohir.A10G156900 Gossypium hirsutum HOM05D007225 ORTHO05D009062 8.0e-36 154.8 154 54.5
Oeu058297.1 Olea europaea HOM05D007225 ORTHO05D009062 8.0e-36 154.8 245 40.8
Hund04436 Selenicereus undatus HOM05D007225 ORTHO05D009062 8.0e-36 154.8 261 40.2
PSO528G0250 Papaver somniferum HOM05D007225 ORTHO05D009062 1.1e-35 154.5 268 38.1
Sc07g0001760 Simmondsia chinensis HOM05D007225 ORTHO05D009062 1.1e-35 154.5 246 40.7
CsaV3_2G019450 Cucumis sativus L. HOM05D007225 ORTHO05D009062 1.4e-35 154.1 237 39.7
Migut.H00686 Erythranthe guttata HOM05D007225 ORTHO05D009062 2.3e-35 153.3 249 42.2
Nn5g28498 Nelumbo nucifera HOM05D007225 ORTHO05D009062 3.1e-35 152.9 154 49.4
PSO170G5625 Papaver somniferum HOM05D007225 ORTHO05D009062 3.1e-35 152.9 269 36.8
AUR62017902 Chenopodium quinoa HOM05D007225 ORTHO05D009062 8.9e-35 151.4 266 39.1
AUR62043562 Chenopodium quinoa HOM05D007225 ORTHO05D009062 8.9e-35 151.4 266 39.1
Phvul.002G273400 Phaseolus vulgaris HOM05D007225 ORTHO05D009062 1.5e-34 150.6 241 42.3
AUR62003589 Chenopodium quinoa HOM05D007225 ORTHO05D009062 3.7e-33 146.0 266 38.0
Duzib187G1928 Durio zibethinus HOM05D007225 ORTHO05D009062 4.9e-33 145.6 253 39.9
ClCG02G000390 Citrullus lanatus HOM05D007225 ORTHO05D009062 6.4e-33 145.2 252 38.1
Carub.0003s2889 Capsella rubella HOM05D007225 ORTHO05D009062 2.4e-32 143.3 89 84.3
Sed0013127 Sechium edule HOM05D007225 ORTHO05D009062 5.4e-32 142.1 234 39.3
EL10Ac1g01390 Beta vulgaris HOM05D007225 ORTHO05D009062 7.1e-32 141.7 306 35.6
ECA233G3017 Erigeron canadensis HOM05D007225 ORTHO05D000131 7.1e-32 141.7 211 42.2
Aqoxy6G00280 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 9.2e-32 141.4 153 48.4
Lsat_1_v5_gn_5_68521 Lactuca sativa HOM05D007225 ORTHO05D009062 9.2e-32 141.4 231 41.6
Peaxi162Scf00172g00611 Petunia axillaris HOM05D007225 ORTHO05D009062 1.6e-31 140.6 152 49.3
MSTRG.23466 Avicennia marina HOM05D007225 ORTHO05D009062 4.6e-31 139.0 247 38.5
HPP92_025180 Vanilla planifolia HOM05D007225 ORTHO05D009062 6.6e-30 135.2 273 34.8
DCAR_010250 Daucus carota HOM05D007225 ORTHO05D009062 8.6e-30 134.8 256 37.9
ATR0709G077 Amborella trichopoda HOM05D007225 ORTHO05D009062 2.5e-29 133.3 152 50.7
Rhsim10G0132500 Rhododendron simsii HOM05D007225 ORTHO05D009062 1.2e-28 131.0 224 37.9
VMungo0251G1761 Vigna mungo HOM05D007225 ORTHO05D009062 2.3e-27 126.7 215 40.5
Nn1g06303 Nelumbo nucifera HOM05D007225 ORTHO05D009062 1.3e-25 120.9 231 36.4
Ah.02g121670 Amaranthus hybridus HOM05D007225 ORTHO05D009062 3.7e-25 119.4 181 39.8
Pp3c8_18500 Physcomitrium patens HOM05D007225 ORTHO05D009062 8.3e-25 118.2 189 38.1
Glyma.08G000900 Glycine max HOM05D007225 ORTHO05D009062 4.1e-24 115.9 233 38.2
AagrBONN_evm.TU.Sc2ySwM_368.986 Anthoceros agrestis HOM05D007225 ORTHO05D009062 1.6e-23 114.0 271 33.2
Os04g0693250 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 1.5e-21 107.5 255 34.5
Haze_25275 Corylus avellana HOM05D007225 ORTHO05D009062 1.9e-21 107.1 101 54.5
unitig_699.g19729 Utricularia gibba HOM05D007225 ORTHO05D009062 1.9e-21 107.1 249 35.3
arahy.Tifrunner.gnm1.ann1.ST1FFJ Arachis hypogaea HOM05D007225 ORTHO05D009062 7.3e-21 105.1 218 38.5
Mapoly0095s0053 Marchantia polymorpha HOM05D007225 ORTHO05D009062 3.6e-20 102.8 273 30.0
SMO146G0397 Selaginella moellendorffii HOM05D007225 ORTHO05D009062 4.7e-20 102.4 266 29.7
HanXRQChr12g0380581 Helianthus annuus HOM05D007225 ORTHO05D009062 1.1e-19 101.3 184 37.0
RcHm_v2.0_Chr4g0412711 Rosa chinensis HOM05D007225 ORTHO05D009062 1.5e-18 97.4 114 46.5
SGA_v2.0_scaffold20G09018 Striga asiatica HOM05D007225 ORTHO05D009062 8.4e-17 91.7 164 36.0
MELO3C023228.2 Cucumis melo HOM05D007225 ORTHO05D009062 4.2e-16 89.4 155 36.1
DCAR_014328 Daucus carota HOM05D007225 ORTHO05D009062 4.2e-16 89.4 237 30.4
AagrBONN_evm.TU.Sc2ySwM_117.1984 Anthoceros agrestis HOM05D007225 ORTHO05D009062 6.0e-15 85.5 155 35.5
SHI11479 Sapria himalayana HOM05D000043 ORTHO05D002577 1.3e-14 84.3 96 42.7
Nitab4.5_0008206g0020 Nicotiana tabacum HOM05D007225 ORTHO05D009062 7.3e-13 78.6 142 38.0
Nitab4.5_0010123g0010 Nicotiana tabacum HOM05D007225 ORTHO05D009062 9.6e-13 78.2 142 39.4
SEGI_25786 Sequoiadendron giganteum HOM05D021798 ORTHO05D009062 6.4e-09 65.5 157 31.8
Os04g0693200 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 2.4e-08 63.5 88 40.9
CBR_g23098 Chara braunii HOM05D007225 ORTHO05D009062 5.1e-06 55.8 100 31.0


User provided reference genes

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