Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 3.1e-287 991.1 501 100.0
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 1.7e-277 958.7 499 96.6
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 1.2e-262 909.4 499 91.8
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 1.3e-258 896.0 499 89.8
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 3.2e-252 874.8 495 88.7
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 5.3e-247 857.4 498 86.3
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 5.3e-247 857.4 498 86.3
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 1.9e-244 849.0 497 85.7
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 1.9e-244 849.0 497 85.7
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 9.4e-244 846.7 498 85.7
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 3.8e-237 824.7 496 83.5
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 1.8e-234 815.8 490 82.0
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 1.8e-231 805.8 495 83.4
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.2e-201 706.8 493 73.0
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.1e-183 647.1 526 64.1
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 1.6e-179 633.3 491 65.8
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 5.3e-178 628.2 499 64.1
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 1.5e-177 626.7 495 65.5
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 2.6e-177 625.9 494 63.6
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 6.4e-176 621.3 500 63.2
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 1.1e-175 620.5 469 66.1
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.1e-175 617.8 463 66.5
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 7.1e-175 617.8 488 64.1
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 1.2e-174 617.1 466 65.2
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.1e-174 616.3 463 66.5
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 7.8e-174 614.4 488 63.9
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 3.0e-173 612.5 499 63.3
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 6.6e-173 611.3 469 65.9
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 1.9e-172 609.8 483 63.4
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 2.5e-172 609.4 469 65.7
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 5.6e-172 608.2 451 66.3
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 7.3e-172 607.8 459 68.0
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.3e-171 607.1 470 65.5
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 1.6e-171 606.7 487 62.8
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 1.6e-171 606.7 502 62.2
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 3.6e-171 605.5 481 62.0
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 8.1e-171 604.4 482 61.4
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 1.1e-170 604.0 476 66.2
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 1.4e-170 603.6 473 63.2
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 1.4e-170 603.6 480 64.0
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 2.4e-170 602.8 482 61.6
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 3.1e-170 602.4 475 66.1
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 9.0e-170 600.9 461 64.0
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 9.0e-170 600.9 445 66.7
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 1.2e-169 600.5 467 64.9
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 9.9e-169 597.4 460 65.7
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 2.2e-168 596.3 472 63.1
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 2.2e-168 596.3 492 62.0
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 2.9e-168 595.9 453 66.9
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 4.9e-168 595.1 495 61.6
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 6.4e-168 594.7 503 61.0
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 6.4e-168 594.7 510 59.8
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 8.4e-168 594.3 504 61.1
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 8.4e-168 594.3 503 60.8
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 8.4e-168 594.3 465 63.7
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 1.1e-167 594.0 469 62.7
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 1.1e-167 594.0 470 63.2
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.9e-167 593.2 465 63.7
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 3.2e-167 592.4 466 63.5
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.2e-167 592.4 466 63.5
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 3.2e-167 592.4 470 63.6
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 7.1e-167 591.3 472 63.1
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 9.3e-167 590.9 470 63.4
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 9.3e-167 590.9 469 64.0
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 1.2e-166 590.5 487 61.0
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 1.2e-166 590.5 453 63.4
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.5e-166 589.0 460 63.5
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 6.0e-166 588.2 466 63.1
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 7.9e-166 587.8 472 62.7
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 1.8e-165 586.6 466 63.3
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.8e-165 586.6 466 62.9
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.8e-165 586.6 490 60.4
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.1e-165 585.1 462 64.3
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 8.7e-165 584.3 489 61.6
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 1.1e-164 583.9 479 62.8
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 1.1e-164 583.9 462 64.5
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 4.3e-164 582.0 478 61.5
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 1.6e-163 580.1 480 61.5
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 4.8e-163 578.6 493 60.9
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.2e-161 573.9 483 59.6
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 4.5e-161 572.0 469 61.0
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 5.8e-161 571.6 491 59.9
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 2.9e-160 569.3 518 56.6
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 4.9e-160 568.5 478 61.3
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 1.1e-159 567.4 485 59.8
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.0e-154 548.9 417 64.7
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 2.2e-152 543.1 540 55.2
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.4e-151 540.4 405 64.2
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 4.2e-151 538.9 477 60.4
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 7.1e-151 538.1 424 61.8
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 1.4e-146 523.9 492 56.5
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 1.8e-138 496.9 543 51.4
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 1.5e-137 493.8 396 62.4
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 2.0e-137 493.4 495 53.9
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.4e-137 492.7 457 57.5
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.0e-136 488.8 484 55.0
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 5.0e-136 488.8 395 62.8
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 2.5e-135 486.5 444 56.3
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 5.5e-135 485.3 497 52.5
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 3.7e-131 472.6 413 58.8
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 5.3e-130 468.8 502 53.2
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 6.5e-120 435.3 440 50.9
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 4.0e-117 426.0 456 50.0
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 4.7e-110 402.5 355 59.4
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 4.0e-101 372.9 265 69.4
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.7e-96 357.5 235 74.0
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 9.5e-87 325.1 265 63.4
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 4.7e-86 322.8 290 59.0
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 6.2e-86 322.4 262 61.1
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 6.2e-86 322.4 262 61.1
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 2.1e-81 307.4 200 73.0
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 6.0e-81 305.8 201 72.1
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 1.3e-80 304.7 302 50.0
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 1.5e-79 301.2 348 48.0
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 1.9e-79 300.8 323 50.2
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 2.0e-76 290.8 240 63.3
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 2.3e-72 277.3 185 71.9
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.7e-65 253.8 213 60.6
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 8.7e-64 248.8 181 66.9
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 1.1e-61 241.9 178 68.5
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 5.8e-60 236.1 229 53.7
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.6e-60 235.7 227 52.9
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 1.1e-58 231.9 212 53.8
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 1.4e-58 231.5 214 54.2
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 9.9e-52 208.8 157 61.8
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 6.0e-49 199.5 170 55.9
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 2.5e-47 194.1 144 61.1
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 7.4e-39 166.0 427 27.2
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 1.2e-36 158.7 509 31.0
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.9e-35 154.1 149 51.7
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.3e-31 140.2 245 37.6
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.2e-28 132.1 137 52.6
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 8.5e-27 125.9 149 46.3
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 9.4e-26 122.5 144 47.9
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.0e-19 102.4 100 49.0
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 1.1e-18 99.0 54 85.2
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 7.4e-15 86.3 322 27.3
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 3.7e-14 84.0 63 61.9
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 6.5e-11 73.2 163 32.5
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 9.4e-10 69.3 69 52.2
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 1.2e-09 68.9 69 63.8
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 1.0e-08 65.9 57 47.4
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 2.2e-06 58.2 76 40.8


User provided reference genes

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