Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 0.0e+00 1159.8 650 100.0
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 0.0e+00 1102.4 652 92.6
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 0.0e+00 1087.0 661 90.5
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 1.3e-309 1065.8 661 85.9
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 5.9e-307 1057.0 662 87.9
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 1.5e-297 1025.8 664 89.3
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 1.6e-296 1022.3 664 89.0
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 1.1e-295 1019.6 663 88.2
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 1.2e-294 1016.1 663 88.1
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 2.6e-294 1015.0 662 84.3
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 5.4e-268 927.5 662 79.2
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 5.3e-223 778.1 640 68.3
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 1.4e-218 763.5 626 68.2
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 7.4e-217 757.7 633 66.4
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 1.7e-216 756.5 623 68.5
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 8.2e-216 754.2 623 68.4
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 5.3e-215 751.5 654 67.4
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 5.3e-215 751.5 623 68.2
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 2.0e-214 749.6 630 66.5
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 2.0e-214 749.6 652 62.3
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 5.0e-213 745.0 644 66.5
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 1.2e-209 733.8 651 63.7
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 3.3e-209 732.3 618 66.0
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 4.4e-209 731.9 617 62.9
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 9.7e-209 730.7 617 62.6
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 1.7e-208 729.9 620 65.3
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 4.8e-208 728.4 628 61.8
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 4.1e-207 725.3 692 59.0
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 1.6e-206 723.4 619 64.9
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.0e-205 718.4 624 64.4
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.1e-204 717.2 623 64.2
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 1.9e-204 716.5 619 60.4
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 3.0e-202 709.1 654 60.4
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 7.5e-201 704.5 624 58.8
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 1.4e-199 700.3 637 62.5
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 3.1e-199 699.1 622 58.7
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 4.1e-199 698.7 614 59.4
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 4.5e-198 695.3 632 58.5
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 4.5e-198 695.3 614 59.6
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 7.7e-198 694.5 627 62.8
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 1.3e-197 693.7 644 62.7
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 3.8e-197 692.2 615 63.9
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 1.1e-196 690.6 531 66.3
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.5e-196 690.3 542 65.5
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 1.9e-196 689.9 653 59.6
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 5.5e-196 688.3 622 58.7
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 5.5e-196 688.3 622 58.7
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 7.2e-196 688.0 637 57.6
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 2.8e-195 686.0 620 59.7
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 4.7e-195 685.3 619 63.5
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 4.7e-195 685.3 671 55.4
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 8.0e-195 684.5 648 56.8
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 1.0e-194 684.1 627 58.1
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 1.4e-194 683.7 635 62.8
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 6.8e-194 681.4 621 59.6
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 8.9e-194 681.0 561 61.7
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 8.9e-194 681.0 645 56.6
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 2.0e-193 679.9 640 56.9
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 5.7e-193 678.3 620 63.9
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 3.1e-191 672.5 585 60.7
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 7.0e-191 671.4 626 57.5
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.7e-190 669.5 621 63.9
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.5e-190 669.1 618 62.0
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 5.9e-190 668.3 626 61.0
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 1.3e-189 667.2 659 59.8
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 6.6e-189 664.8 641 60.5
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.1e-188 664.1 622 61.6
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 1.9e-188 663.3 571 60.4
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 1.9e-188 663.3 620 57.9
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 2.5e-188 662.9 613 62.8
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 4.3e-188 662.1 620 57.4
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 5.6e-188 661.8 575 58.8
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 6.1e-187 658.3 648 60.0
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 8.0e-187 657.9 572 64.3
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 8.0e-187 657.9 619 56.7
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.4e-186 657.1 626 56.5
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 5.4e-183 645.2 521 66.6
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 6.0e-182 641.7 631 59.0
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 5.0e-181 638.6 660 55.9
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 6.8e-178 628.2 543 63.9
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 2.5e-172 609.8 650 56.5
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 6.4e-168 595.1 630 56.2
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 1.4e-167 594.0 621 56.4
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 4.3e-164 582.4 507 65.5
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 2.8e-163 579.7 631 51.2
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.2e-158 564.3 457 64.1
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 3.3e-156 556.2 628 55.4
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 7.3e-156 555.1 467 61.7
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 7.3e-156 555.1 622 50.8
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 1.6e-150 537.3 621 48.3
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 4.8e-147 525.8 458 60.9
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.4e-136 488.8 488 55.9
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 1.4e-130 471.1 614 48.5
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 1.4e-127 461.1 612 46.7
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 1.3e-125 454.5 630 45.6
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 1.5e-124 451.1 623 48.8
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.5e-124 451.1 392 62.5
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 9.7e-124 448.4 395 62.0
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 3.7e-123 446.4 477 50.7
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.3e-117 427.2 321 66.7
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.3e-116 423.3 364 66.8
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 1.1e-114 418.3 627 40.8
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 5.0e-104 382.9 354 56.5
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 3.9e-101 373.2 502 49.2
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 1.0e-93 348.6 316 55.1
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.5e-84 318.2 491 42.0
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 3.7e-83 313.5 311 57.6
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 4.1e-82 310.1 255 65.9
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.5e-71 272.3 188 69.7
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.0e-68 264.6 207 61.4
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 3.7e-67 260.4 278 55.8
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 1.1e-66 258.8 184 76.6
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.2e-62 245.4 178 66.9
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.6e-57 226.9 188 60.6
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 1.1e-55 222.2 176 84.1
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 4.9e-51 206.8 184 63.0
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 5.1e-48 196.8 196 65.3
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 7.3e-47 193.0 349 37.2
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.1e-42 179.1 121 69.4
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.5e-36 158.7 168 51.8
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 3.4e-36 157.5 252 44.0
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 9.9e-36 156.0 161 64.6
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.3e-35 155.6 161 64.6
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.7e-35 155.2 115 68.7
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 1.0e-32 146.0 168 54.8
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.8e-30 137.1 93 71.0
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.1e-29 136.0 101 62.4
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.2e-26 124.0 97 61.9
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.3e-23 114.0 80 67.5
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 3.4e-20 104.4 73 61.6
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.4e-20 104.4 78 66.7
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 2.5e-18 98.2 75 58.7
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 2.1e-17 95.1 99 48.5
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 6.7e-16 90.1 46 91.3
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 8.7e-16 89.7 82 58.5
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 2.5e-15 88.2 46 89.1
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 2.5e-15 88.2 46 89.1
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 1.2e-12 79.3 89 48.3
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 3.4e-12 77.8 47 70.2
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 3.8e-11 74.3 86 47.7
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 4.2e-10 70.9 143 32.9


User provided reference genes

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