Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 1.6e-278 962.2 508 100.0
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 7.5e-265 916.8 511 95.3
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 3.9e-253 877.9 514 92.0
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 2.8e-235 818.5 517 86.7
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 1.4e-226 789.6 519 84.4
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 9.9e-225 783.5 523 83.2
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 2.1e-211 739.2 516 79.5
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 4.8e-211 738.0 516 79.3
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 8.1e-211 737.3 520 78.7
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 1.2e-209 733.4 518 79.0
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 5.8e-209 731.1 487 81.5
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 2.9e-208 728.8 514 79.2
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 1.1e-207 726.9 514 79.0
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 1.1e-207 726.9 514 79.0
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 2.4e-207 725.7 487 81.3
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 2.1e-203 712.6 512 78.5
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 2.4e-202 709.1 512 77.7
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 7.2e-191 671.0 527 73.6
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 4.7e-150 535.4 517 62.7
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 2.8e-142 509.6 528 59.1
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 4.6e-121 439.1 525 52.2
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 9.6e-119 431.4 539 50.8
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.0e-116 423.7 540 50.4
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 9.9e-116 421.4 548 50.2
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 6.4e-115 418.7 541 49.5
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 3.2e-114 416.4 554 51.8
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.6e-113 414.1 536 49.4
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 6.0e-113 412.1 539 50.1
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.0e-112 411.4 551 47.5
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 1.1e-111 407.9 522 48.1
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 3.3e-111 406.4 511 49.9
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 5.6e-111 405.6 552 48.4
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 6.2e-110 402.1 556 49.8
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 2.4e-109 400.2 524 48.9
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.3e-109 399.1 523 50.1
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 6.9e-109 398.7 529 51.2
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 1.2e-108 397.9 548 50.0
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 1.5e-108 397.5 542 47.8
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 1.5e-108 397.5 530 47.5
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 2.6e-108 396.7 545 47.9
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 3.4e-108 396.4 503 47.7
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 5.8e-108 395.6 524 50.4
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 9.9e-108 394.8 541 48.4
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 1.7e-107 394.0 516 48.8
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 3.8e-107 392.9 526 48.5
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 3.8e-107 392.9 526 49.0
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 4.9e-107 392.5 555 48.3
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 6.4e-107 392.1 539 48.4
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 8.4e-107 391.7 538 49.8
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 1.1e-106 391.3 530 46.0
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 1.9e-106 390.6 507 50.9
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.4e-106 390.2 493 48.3
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.2e-106 389.8 530 45.8
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.6e-105 387.5 530 46.0
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.6e-105 387.5 512 50.2
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 4.6e-105 386.0 487 48.0
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 6.0e-105 385.6 530 45.5
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 7.8e-105 385.2 527 48.4
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 8.7e-104 381.7 540 49.3
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 3.3e-103 379.8 548 47.3
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 7.3e-103 378.6 546 46.3
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 1.3e-102 377.9 495 49.3
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 1.3e-102 377.9 529 48.2
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 8.1e-102 375.2 497 48.1
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 5.3e-101 372.5 540 45.9
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 6.9e-101 372.1 567 45.7
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 2.0e-100 370.5 531 47.5
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 4.5e-100 369.4 547 46.4
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 1.3e-99 367.9 495 48.5
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.2e-99 367.1 541 43.8
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.1e-98 364.8 541 45.7
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 3.2e-98 363.2 535 46.4
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 5.4e-98 362.5 477 49.9
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.2e-97 361.3 541 45.7
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 4.6e-97 359.4 469 49.5
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 3.9e-96 356.3 484 47.3
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 6.7e-96 355.5 524 45.6
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 5.6e-95 352.4 540 44.4
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 1.3e-94 351.3 530 44.7
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 3.7e-94 349.7 540 46.1
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 3.7e-94 349.7 524 45.2
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 8.1e-94 348.6 539 44.0
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 1.8e-93 347.4 395 52.9
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.8e-93 347.4 509 45.4
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 6.9e-93 345.5 526 45.6
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.5e-92 344.4 542 44.6
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 4.5e-92 342.8 509 45.4
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 5.8e-92 342.4 559 44.9
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 7.6e-92 342.0 531 45.2
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.3e-91 341.3 534 42.9
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.3e-91 341.3 567 44.8
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 8.4e-91 338.6 506 46.0
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 1.4e-90 337.8 637 41.1
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 2.5e-90 337.0 540 44.6
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 5.5e-90 335.9 513 43.5
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 3.5e-89 333.2 537 44.1
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 7.9e-89 332.0 533 44.7
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 3.9e-88 329.7 539 44.9
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 4.3e-87 326.2 488 45.1
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 7.4e-87 325.5 499 44.3
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 2.8e-86 323.6 378 50.5
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 4.8e-86 322.8 521 44.3
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.1e-85 321.6 539 41.7
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 1.1e-85 321.6 532 45.5
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 2.4e-85 320.5 537 42.3
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 1.2e-84 318.2 503 42.9
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 1.7e-83 314.3 490 43.1
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 7.1e-82 308.9 547 42.0
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 2.3e-80 303.9 528 42.2
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.5e-79 300.4 533 40.5
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 4.3e-79 299.7 508 40.4
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 5.7e-79 299.3 379 48.0
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 1.3e-78 298.1 509 44.0
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.3e-78 298.1 510 42.9
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 1.3e-78 298.1 383 51.7
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 2.2e-78 297.4 520 43.1
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 8.2e-78 295.4 519 42.4
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 5.3e-77 292.7 512 42.8
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 1.3e-75 288.1 534 41.9
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 1.7e-75 287.7 510 41.0
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 2.2e-75 287.3 542 39.3
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 1.4e-74 284.6 427 46.8
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 4.2e-74 283.1 557 41.8
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.2e-73 281.6 500 41.0
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 2.1e-73 280.8 394 46.2
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.4e-72 278.1 517 40.8
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.8e-70 270.4 485 43.7
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 1.1e-69 268.5 509 39.7
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 1.8e-69 267.7 506 38.7
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 5.3e-69 266.2 556 38.5
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 9.1e-69 265.4 521 39.3
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 8.5e-67 258.8 374 45.7
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 3.2e-66 256.9 437 41.2
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.6e-65 254.6 505 38.4
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 1.5e-63 248.1 398 41.0
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 2.0e-63 247.7 412 41.5
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 8.8e-56 222.2 386 41.2
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 8.2e-54 215.7 315 46.3
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 3.5e-52 210.3 396 37.9
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 7.7e-52 209.1 279 47.7
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 5.5e-50 203.0 330 42.1
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 3.4e-47 193.7 490 35.9
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 1.1e-45 188.7 449 34.7
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 2.7e-44 184.1 290 46.6
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.2e-43 181.0 382 36.1
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 6.5e-43 179.5 477 34.6
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.6e-41 174.9 374 35.0
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.8e-40 171.4 380 36.3
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.8e-38 164.1 509 31.4
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 2.1e-33 147.9 458 30.8
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 6.1e-33 146.4 491 29.7
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 8.0e-33 146.0 246 43.9
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 5.2e-32 143.3 192 50.5
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.7e-30 138.3 197 43.1
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 2.9e-30 137.5 253 37.9
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 1.1e-29 135.6 249 38.6
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.4e-29 135.2 188 47.9
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 1.6e-25 121.7 219 39.3
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 6.2e-25 119.8 271 35.4
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.8e-24 118.2 180 42.8
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.4e-23 114.0 123 54.5
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 7.5e-23 112.8 108 55.6
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 8.3e-22 109.4 382 28.5
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 4.1e-21 107.1 239 39.3
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 2.0e-20 104.8 180 45.6
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 2.0e-20 104.8 143 42.7
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 7.3e-18 96.3 92 51.1
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 6.2e-17 93.2 122 49.2
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.4e-16 92.0 275 34.2
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 1.2e-12 79.0 62 62.9
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.6e-12 78.6 115 41.7
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 1.5e-10 72.0 107 37.4
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 1.5e-10 72.0 132 39.4
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.6e-09 68.6 58 55.2
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 1.2e-07 62.4 67 50.7
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 4.4e-07 60.5 42 64.3
AT5G62800 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 9.9e-07 59.3 40 80.0
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 9.9e-07 59.3 409 22.2


User provided reference genes

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