Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 2.6e-300 1034.6 530 100.0
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 1.1e-287 992.6 530 96.0
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 7.8e-281 969.9 531 93.6
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 1.7e-267 925.6 530 90.8
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 2.2e-267 925.2 531 91.0
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 5.4e-266 920.6 531 90.6
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 8.7e-248 860.1 538 84.2
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 1.1e-245 853.2 531 85.7
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 3.1e-245 851.7 531 85.3
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 3.1e-245 851.7 531 85.5
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 1.5e-244 849.4 531 85.5
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 7.6e-244 847.0 531 85.3
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 5.5e-242 840.9 533 84.6
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 5.3e-221 771.2 530 77.7
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 4.5e-188 661.8 545 65.7
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.3e-187 660.2 545 65.5
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 1.5e-186 656.8 552 65.2
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 9.5e-186 654.1 547 64.7
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 4.7e-185 651.7 547 64.0
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 3.0e-184 649.0 545 65.5
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 1.4e-181 640.2 524 65.8
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 1.8e-181 639.8 550 63.6
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 5.4e-181 638.3 547 62.9
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 9.2e-181 637.5 542 65.3
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 4.5e-180 635.2 559 62.1
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 7.7e-180 634.4 555 63.2
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 1.7e-179 633.3 546 63.2
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 3.8e-179 632.1 550 63.1
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 1.1e-178 630.6 523 65.2
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 1.1e-178 630.6 447 70.9
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 2.5e-178 629.4 565 61.9
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 2.5e-178 629.4 541 63.0
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 4.0e-176 622.1 519 63.0
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 2.9e-174 615.9 498 65.3
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 1.1e-173 614.0 546 61.9
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 9.2e-173 610.9 467 69.6
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 3.0e-171 605.9 558 60.4
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 4.3e-170 602.1 555 58.7
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 5.6e-170 601.7 561 59.2
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 5.6e-170 601.7 465 68.8
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 2.1e-169 599.7 559 59.9
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 2.1e-169 599.7 529 67.7
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 8.0e-169 597.8 527 61.7
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 1.4e-168 597.0 467 68.3
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 6.8e-168 594.7 564 59.8
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 6.8e-168 594.7 542 58.3
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 2.0e-167 593.2 546 60.3
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 2.6e-167 592.8 467 67.5
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 3.4e-167 592.4 476 67.2
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 5.8e-167 591.7 547 58.9
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 5.8e-167 591.7 555 57.5
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 5.8e-167 591.7 467 67.5
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 2.9e-166 589.3 544 61.2
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 4.9e-166 588.6 517 62.5
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 2.4e-165 586.3 546 57.7
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 9.2e-165 584.3 462 65.8
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 1.2e-164 583.9 523 59.8
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 2.0e-164 583.2 555 57.5
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 3.5e-164 582.4 600 55.2
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 6.0e-164 581.6 463 65.2
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.9e-163 578.9 476 65.3
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 3.9e-163 578.9 524 60.5
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 5.0e-163 578.6 476 65.3
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 8.6e-163 577.8 469 66.5
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 8.6e-163 577.8 484 63.2
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.3e-162 575.9 516 62.2
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 3.3e-162 575.9 524 60.7
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 7.3e-162 574.7 517 62.1
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 7.3e-162 574.7 537 58.8
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.6e-161 573.5 515 61.6
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 1.6e-161 573.5 460 65.7
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.1e-161 573.2 517 62.1
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 6.2e-161 571.6 478 63.0
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 4.0e-160 568.9 524 59.0
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 2.0e-159 566.6 566 57.1
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 2.0e-159 566.6 479 63.5
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 1.3e-158 563.9 436 65.8
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 3.2e-157 559.3 552 57.1
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 3.2e-157 559.3 435 66.9
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 9.2e-157 557.8 514 59.9
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 1.2e-156 557.4 516 61.2
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 3.5e-156 555.8 515 59.2
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 3.9e-155 552.4 518 57.3
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 9.5e-154 547.7 516 56.6
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 3.1e-152 542.7 540 57.6
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 4.4e-151 538.9 527 58.6
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 9.9e-151 537.7 508 57.3
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 1.9e-149 533.5 465 60.0
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 2.4e-149 533.1 438 66.2
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 7.8e-148 528.1 555 55.5
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 2.3e-147 526.6 554 54.5
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 2.1e-145 520.0 465 61.7
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 3.6e-145 519.2 529 57.1
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 1.1e-144 517.7 443 62.8
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 8.9e-144 514.6 411 63.0
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 4.6e-140 502.3 483 58.2
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 4.8e-137 492.3 677 45.9
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 3.4e-135 486.1 523 53.9
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.3e-134 484.2 519 54.1
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 4.9e-134 482.3 325 74.2
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 1.4e-133 480.7 497 52.5
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 4.2e-133 479.2 499 54.9
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 7.9e-132 474.9 369 67.2
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 6.7e-131 471.9 536 53.0
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 6.2e-129 465.3 516 49.8
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 9.9e-127 458.0 343 68.5
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 8.7e-123 444.9 411 57.7
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 9.6e-122 441.4 465 55.3
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 1.4e-104 384.4 312 65.1
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 7.9e-100 368.6 452 49.6
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 1.7e-94 350.9 534 44.0
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.8e-91 340.9 376 50.0
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 3.1e-88 330.1 259 65.6
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 5.0e-86 322.8 236 61.9
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.3e-70 270.8 220 64.5
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 9.8e-66 255.4 295 51.5
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 1.3e-65 255.0 500 35.6
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 1.2e-63 248.4 504 35.7
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 5.0e-54 216.5 353 35.7
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 1.3e-41 175.3 247 44.9
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.6e-38 162.5 95 85.3
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 1.1e-32 145.6 120 55.8
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 2.1e-31 141.4 202 36.6
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 2.8e-28 131.0 237 39.2
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 7.1e-24 116.3 62 85.5
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 1.6e-23 115.2 80 68.8
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 1.3e-20 105.5 139 46.0
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 9.3e-16 89.4 121 52.1
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 1.3e-14 85.5 83 51.8


User provided reference genes

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