Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 2.8e-214 748.8 521 100.0
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 6.2e-198 694.5 525 90.7
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 1.0e-163 580.9 528 72.2
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 1.5e-159 567.0 530 71.5
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 4.3e-159 565.5 524 73.3
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 5.0e-155 552.0 559 69.4
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 1.2e-153 547.4 529 70.7
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 1.1e-151 540.8 528 73.1
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 7.4e-151 538.1 529 70.9
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 2.4e-149 533.1 543 68.3
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 9.4e-138 494.6 526 67.1
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 6.3e-118 428.7 589 59.3
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 1.6e-113 414.1 414 70.8
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 6.2e-97 359.0 559 61.5
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 3.7e-94 349.7 472 62.5
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.1e-90 338.2 552 53.6
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 5.2e-88 329.3 546 53.5
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 1.2e-87 328.2 561 54.0
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 2.6e-87 327.0 540 51.3
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 1.9e-85 320.9 542 53.7
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 3.5e-84 316.6 545 51.2
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 7.8e-84 315.5 538 52.6
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 1.0e-83 315.1 538 52.0
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 8.7e-83 312.0 549 50.6
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 1.5e-82 311.2 551 50.3
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 2.1e-81 307.4 537 52.7
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 4.8e-81 306.2 558 54.1
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 3.1e-80 303.5 562 48.8
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 4.0e-80 303.1 549 48.5
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.0e-80 303.1 553 52.4
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 5.3e-80 302.8 552 50.5
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 5.3e-80 302.8 545 49.4
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 6.9e-80 302.4 556 52.9
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 2.6e-79 300.4 541 52.3
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 3.4e-79 300.1 548 53.5
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.4e-79 300.1 549 57.7
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 4.4e-79 299.7 579 48.2
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.3e-78 298.1 550 58.2
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 2.9e-78 297.0 600 49.7
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 4.9e-78 296.2 551 49.9
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 1.4e-77 294.7 368 57.1
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 1.4e-77 294.7 550 48.5
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 1.4e-77 294.7 551 50.8
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 1.9e-77 294.3 562 53.2
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.9e-77 294.3 536 50.6
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.4e-77 293.9 556 48.7
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 2.4e-77 293.9 533 50.3
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 4.2e-77 293.1 564 50.4
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 4.2e-77 293.1 544 53.1
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 5.4e-77 292.7 541 52.7
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 7.1e-77 292.4 550 55.8
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 9.3e-77 292.0 553 52.3
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 1.2e-76 291.6 559 49.2
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.6e-76 291.2 574 49.1
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 2.1e-76 290.8 535 47.3
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 2.7e-76 290.4 555 52.6
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 4.6e-76 289.7 551 53.9
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.6e-76 289.7 553 52.1
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 2.3e-75 287.3 559 47.9
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 2.3e-75 287.3 545 51.0
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 3.0e-75 287.0 567 53.8
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.9e-75 286.6 555 54.4
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 1.1e-74 285.0 555 49.5
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 3.3e-74 283.5 537 54.2
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 4.3e-74 283.1 552 49.3
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 4.3e-74 283.1 565 48.8
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 5.6e-74 282.7 546 54.4
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 9.6e-74 282.0 556 50.4
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 1.6e-73 281.2 579 52.7
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 2.8e-73 280.4 560 56.2
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 3.6e-73 280.0 564 46.5
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 4.8e-73 279.6 582 47.3
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 8.1e-73 278.9 552 56.0
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 1.1e-72 278.5 555 50.6
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 1.4e-72 278.1 543 51.2
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.4e-72 277.3 543 51.0
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 2.4e-72 277.3 549 52.1
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 3.1e-72 276.9 586 46.1
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 5.3e-72 276.2 552 52.7
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 2.0e-71 274.2 556 47.7
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 5.8e-71 272.7 566 51.2
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 1.3e-70 271.6 571 52.4
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.7e-70 271.2 536 49.8
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 2.2e-70 270.8 551 48.8
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 2.9e-70 270.4 548 46.4
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 2.9e-70 270.4 571 49.0
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 3.8e-70 270.0 548 53.3
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 8.4e-70 268.9 558 47.3
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 1.4e-69 268.1 563 45.1
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 1.2e-68 265.0 568 48.8
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.2e-68 265.0 535 53.5
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 1.6e-68 264.6 554 48.6
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.3e-67 260.8 552 49.3
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 3.0e-67 260.4 550 44.0
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 3.9e-67 260.0 548 47.8
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 5.1e-67 259.6 539 50.6
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 5.1e-67 259.6 547 51.9
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 8.7e-67 258.8 575 47.7
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 3.7e-65 253.4 539 51.6
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 1.4e-64 251.5 554 49.3
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 1.5e-63 248.1 538 48.5
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 4.5e-63 246.5 583 46.7
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 1.7e-62 244.6 551 55.4
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 8.4e-62 242.3 555 47.4
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 8.4e-62 242.3 531 48.6
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 1.1e-61 241.9 543 52.9
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 4.6e-60 236.5 198 70.2
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 1.5e-58 231.5 555 47.4
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 5.7e-58 229.6 542 44.5
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 2.8e-57 227.3 216 63.4
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.1e-56 225.3 166 75.9
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 2.4e-56 224.2 588 44.0
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 4.5e-55 219.9 170 72.4
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 7.6e-55 219.2 167 71.9
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 3.8e-54 216.9 557 44.9
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 6.5e-54 216.1 205 64.4
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 3.5e-52 210.3 487 48.3
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 6.7e-51 206.1 535 43.6
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 1.5e-50 204.9 156 71.8
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 5.7e-50 203.0 180 63.9
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 1.5e-47 194.9 523 37.7
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 2.2e-41 174.5 469 43.5
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 2.9e-38 164.1 479 43.0
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 6.1e-36 156.4 111 78.4
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 5.3e-32 143.3 123 66.7
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 3.8e-30 137.1 127 65.4
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 7.2e-29 132.9 290 49.7
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 9.7e-26 122.5 474 42.6
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 1.3e-25 122.1 109 64.2
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 6.3e-25 119.8 103 68.0
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 5.3e-24 116.7 119 63.0
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 7.0e-24 116.3 110 65.5
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.2e-22 111.3 115 60.0
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 1.2e-20 105.5 105 60.0
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 3.4e-18 97.4 142 42.3
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 5.7e-18 96.7 108 53.7
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.3e-17 95.5 140 46.4
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 4.8e-17 93.6 64 75.0
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 4.8e-17 93.6 83 62.7
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 5.9e-15 86.7 57 78.9
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.5e-13 82.0 75 66.7
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.0e-11 75.9 80 65.0
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.0e-11 75.9 80 65.0
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 1.4e-11 75.5 57 73.7
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 2.6e-10 71.2 86 53.5
BcaB04g19993 Brassica carinata HOM05D004889 ORTHO05D005478 1.7e-09 68.6 65 67.7
SEGI_30705 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 2.0e-07 61.6 84 47.6
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 2.0e-07 61.6 85 45.9
BcaC04g23280 Brassica carinata HOM05D000171 ORTHO05D000101 3.5e-07 60.8 37 86.5
SEGI_10093 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 4.5e-07 60.5 84 46.4
C09p10210 Brassica napus HOM05D000171 ORTHO05D000101 7.7e-07 59.7 36 88.9
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 2.3e-06 58.2 77 53.2
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 2.9e-06 57.8 207 30.4
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.8e-06 57.4 48 66.7


User provided reference genes

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