Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.7e-45 185.7 96 100.0
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 6.1e-43 177.2 93 97.8
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 4.4e-41 171.0 95 94.7
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 5.4e-39 164.1 95 90.5
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 5.0e-37 157.5 95 85.3
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.2e-33 146.4 91 81.3
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.3e-24 116.3 94 67.0
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.3e-24 116.3 97 60.8
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 7.1e-23 110.5 95 63.2
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.2e-22 109.8 93 63.4
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 2.1e-22 109.0 95 62.1
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 4.6e-22 107.8 93 59.1
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 4.6e-22 107.8 93 59.1
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 1.7e-21 105.9 93 57.0
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 1.7e-21 105.9 93 57.0
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 1.2e-19 99.8 74 64.9
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 4.7e-19 97.8 81 59.3
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 9.9e-17 90.1 90 51.1
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 4.9e-16 87.8 97 49.5
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 1.1e-15 86.7 82 54.9
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 5.4e-15 84.3 98 45.9
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 5.4e-15 84.3 96 45.8
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 1.6e-14 82.8 92 44.6
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 2.7e-14 82.0 100 44.0
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 2.7e-14 82.0 100 44.0
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 2.7e-14 82.0 88 45.5
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 2.7e-14 82.0 99 46.5
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 3.5e-14 81.6 92 50.0
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 3.5e-14 81.6 97 46.4
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 4.6e-14 81.3 81 49.4
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 6.0e-14 80.9 93 44.1
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 6.0e-14 80.9 73 53.4
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 7.8e-14 80.5 100 44.0
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 1.0e-13 80.1 94 45.7
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 1.0e-13 80.1 96 45.8
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 1.3e-13 79.7 95 45.3
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.3e-13 79.7 90 45.6
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 1.3e-13 79.7 92 45.7
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 1.7e-13 79.3 84 46.4
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 1.7e-13 79.3 93 44.1
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 2.3e-13 79.0 93 43.0
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 3.0e-13 78.6 93 44.1
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 3.9e-13 78.2 74 44.6
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 3.9e-13 78.2 82 42.7
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 5.1e-13 77.8 86 45.3
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 5.1e-13 77.8 63 50.8
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 6.6e-13 77.4 68 51.5
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 8.6e-13 77.0 68 51.5
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 8.6e-13 77.0 94 43.6
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 8.6e-13 77.0 95 44.2
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 8.6e-13 77.0 93 48.4
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 1.1e-12 76.6 95 44.2
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 1.5e-12 76.3 101 45.5
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 1.5e-12 76.3 97 44.3
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 1.5e-12 76.3 85 44.7
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 1.5e-12 76.3 87 46.0
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.9e-12 75.9 70 48.6
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.9e-12 75.9 88 45.5
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 1.9e-12 75.9 86 45.3
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.5e-12 75.5 86 46.5
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 2.5e-12 75.5 79 49.4
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.3e-12 75.1 91 42.9
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.3e-12 75.1 91 42.9
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 3.3e-12 75.1 91 42.9
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 4.3e-12 74.7 96 47.9
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 4.3e-12 74.7 84 42.9
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 4.3e-12 74.7 84 42.9
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 4.3e-12 74.7 64 46.9
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 4.3e-12 74.7 64 46.9
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 5.6e-12 74.3 92 42.4
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 5.6e-12 74.3 89 46.1
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 5.6e-12 74.3 98 41.8
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 5.6e-12 74.3 96 42.7
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 9.6e-12 73.6 88 40.9
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 9.6e-12 73.6 86 41.9
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 9.6e-12 73.6 70 51.4
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 1.2e-11 73.2 93 44.1
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 1.2e-11 73.2 65 46.2
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 1.6e-11 72.8 82 41.5
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 1.6e-11 72.8 91 38.5
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 1.6e-11 72.8 84 44.0
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 1.6e-11 72.8 93 44.1
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 1.6e-11 72.8 91 40.7
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 2.1e-11 72.4 88 40.9
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.1e-11 72.4 97 45.4
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 2.1e-11 72.4 97 45.4
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 2.1e-11 72.4 93 41.9
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 2.1e-11 72.4 78 43.6
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 2.8e-11 72.0 94 42.6
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 2.8e-11 72.0 101 38.6
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 2.8e-11 72.0 105 42.9
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 2.8e-11 72.0 61 47.5
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 3.6e-11 71.6 91 40.7
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 3.6e-11 71.6 84 41.7
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.7e-11 71.2 86 46.5
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 4.7e-11 71.2 86 46.5
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 6.2e-11 70.9 93 39.8
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 6.2e-11 70.9 88 40.9
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 8.1e-11 70.5 91 40.7
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 1.1e-10 70.1 91 38.5
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.1e-10 70.1 90 36.7
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.4e-10 69.7 91 38.5
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.4e-10 69.7 92 39.1
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 1.4e-10 69.7 87 43.7
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 1.8e-10 69.3 75 38.7
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 1.8e-10 69.3 68 45.6
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 1.8e-10 69.3 81 38.3
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 3.1e-10 68.6 63 47.6
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 4.0e-10 68.2 60 48.3
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 5.2e-10 67.8 52 55.8
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 5.2e-10 67.8 85 45.9
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 6.8e-10 67.4 93 38.7
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 8.9e-10 67.0 90 36.7
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 8.9e-10 67.0 92 39.1
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 1.2e-09 66.6 90 36.7
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 1.2e-09 66.6 90 36.7
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 1.2e-09 66.6 90 36.7
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 1.2e-09 66.6 90 36.7
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 1.2e-09 66.6 93 37.6
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 2.0e-09 65.9 70 38.6
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.6e-09 65.5 86 39.5
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 2.9e-08 62.0 83 36.1
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 4.9e-08 61.2 85 41.2
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 6.4e-08 60.8 95 38.9
Os08g0546300 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 1.4e-07 59.7 60 41.7
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 2.4e-07 58.9 85 36.5


User provided reference genes

Program Settings