Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G61710 Arabidopsis thaliana HOM05D010095 ORTHO05D012148 1.2e-80 303.1 156 100.0
Thhalv10009861m.g Eutrema salsugineum HOM05D010095 ORTHO05D012148 5.3e-52 208.0 178 69.7
BcaB03g15797 Brassica carinata HOM05D010095 ORTHO05D012148 2.9e-50 202.2 182 64.8
C05p01370 Brassica napus HOM05D010095 ORTHO05D012148 8.4e-50 200.7 183 63.9
BolC5t28919H Brassica oleracea HOM05D010095 ORTHO05D012148 1.1e-49 200.3 184 63.6
A10p01390 Brassica napus HOM05D010095 ORTHO05D012148 1.3e-47 193.4 183 62.3
BraA10t42415Z Brassica rapa HOM05D010095 ORTHO05D012148 9.6e-46 187.2 184 60.3
CARHR001980 Cardamine hirsuta HOM05D010095 ORTHO05D012148 6.5e-42 174.5 188 58.0
AL1G12030 Arabidopsis lyrata HOM05D010095 ORTHO05D012148 1.1e-41 173.7 167 63.5
Carub.0001s0175 Capsella rubella HOM05D010095 ORTHO05D012148 3.7e-37 158.7 179 55.3
A09p01600 Brassica napus HOM05D010095 ORTHO05D012148 2.6e-35 152.5 166 55.4
C09p01700 Brassica napus HOM05D010095 ORTHO05D012148 4.5e-35 151.8 168 54.8
BolC9t53104H Brassica oleracea HOM05D010095 ORTHO05D012148 4.5e-35 151.8 168 54.8
BcaB01g02075 Brassica carinata HOM05D010095 ORTHO05D012148 2.2e-34 149.4 172 52.9
BraA09t35818Z Brassica rapa HOM05D010095 ORTHO05D012148 2.2e-34 149.4 167 54.5
BcaC04g24041 Brassica carinata HOM05D010095 ORTHO05D012148 2.9e-34 149.1 179 52.0
AT4G02160 Arabidopsis thaliana HOM05D010095 ORTHO05D012148 3.9e-31 138.7 170 51.8
AL6G51000 Arabidopsis lyrata HOM05D010095 ORTHO05D012148 1.8e-28 129.8 167 51.5
Aa31LG1G9880 Aethionema arabicum HOM05D010095 ORTHO05D012148 2.4e-28 129.4 106 66.0
CARHR250340 Cardamine hirsuta HOM05D010095 ORTHO05D012148 5.9e-27 124.8 172 48.8
Thhalv10028992m.g Eutrema salsugineum HOM05D010095 ORTHO05D012148 1.1e-22 110.5 170 44.1
THA.LOC104825949 Tarenaya hassleriana HOM05D010095 ORTHO05D012148 2.2e-21 106.3 158 45.6
Carub.0006s3501 Capsella rubella HOM05D010095 ORTHO05D012148 3.7e-21 105.5 171 43.9
Sp6g02060 Schrenkiella parvula HOM05D010095 ORTHO05D012148 9.4e-17 90.9 167 40.7
Sp1g01680 Schrenkiella parvula HOM05D007766 ORTHO05D009733 3.3e-14 82.4 140 42.9
SHI19828 Sapria himalayana HOM05D007468 ORTHO05D009051 1.7e-10 70.1 165 33.3
TWI36G1516 Tripterygium wilfordii HOM05D007468 ORTHO05D009051 6.5e-10 68.2 164 34.8
Cfa005843 Carpinus fangiana HOM05D007468 ORTHO05D009051 8.5e-10 67.8 152 36.8
ClCG09G005280 Citrullus lanatus HOM05D007468 ORTHO05D009051 1.6e-08 63.5 162 34.6
Haze_05007 Corylus avellana HOM05D007468 ORTHO05D009051 1.6e-08 63.5 153 35.3
Sed0000824 Sechium edule HOM05D007468 ORTHO05D009051 2.1e-08 63.2 146 37.7
QL12p028937 Quercus lobata HOM05D007468 ORTHO05D009051 8.0e-08 61.2 167 30.5
CiPaw.07G114800 Carya illinoinensis HOM05D007468 ORTHO05D009051 1.0e-07 60.8 145 33.8
Cpa.g.sc18.3 Carica papaya HOM05D007468 ORTHO05D009051 1.4e-07 60.5 176 29.0
MELO3C015942.2 Cucumis melo HOM05D007468 ORTHO05D009051 2.3e-07 59.7 160 33.1
CsaV3_7G029790 Cucumis sativus L. HOM05D007468 ORTHO05D009051 3.0e-07 59.3 160 33.1
Duzib133G0259 Durio zibethinus HOM05D007468 ORTHO05D009051 4.0e-07 58.9 174 31.6
Glyma.02G014400 Glycine max HOM05D007468 ORTHO05D009051 4.0e-07 58.9 164 27.4
Duzib138G0571 Durio zibethinus HOM05D007468 ORTHO05D009051 6.7e-07 58.2 172 30.2
Aqoxy2G02809 Aquilegia oxysepala HOM05D007468 ORTHO05D009051 1.2e-06 57.4 157 32.5
Cc08_g11840 Coffea canephora HOM05D007468 ORTHO05D009051 5.7e-06 55.1 68 51.5
Nn3g21627 Nelumbo nucifera HOM05D007468 ORTHO05D009051 5.7e-06 55.1 155 29.7


User provided reference genes

Program Settings